Mercurial > repos > yufei-luo > s_mart
view SMART/Java/Python/cleaning/DefaultCleaner.py @ 64:783e6ed4eb66
Minor bug correction.
Added casts to str in Galaxy XML files. Also closed the writer in the Python script "changeTagName."
author | m-zytnicki |
---|---|
date | Mon, 19 Oct 2015 14:16:44 +0200 |
parents | 769e306b7933 |
children |
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#! /usr/bin/env python # # Copyright INRA-URGI 2009-2010 # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. # """ Default cleaner. Does nothing but copying. """ from SMART.Java.Python.cleaning.TranscriptListCleaner import TranscriptListCleaner from SMART.Java.Python.misc.Progress import Progress from SMART.Java.Python.misc.UnlimitedProgress import UnlimitedProgress class DefaultCleaner(TranscriptListCleaner): def __init__(self, verbosity = 1): super(DefaultCleaner, self).__init__(verbosity) def _clean(self): self.outputHandle.write(self.inputHandle.read())