Mercurial > repos > yufei-luo > s_mart
view SMART/DiffExpAnal/DESeqTools/barplotNul.R @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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# barplotNul # barplot representing null counts per sample # input : counts, target, projectName # output : barplotNul (png) # created Feb 7th, 2012 # modified April 30th, 2012 (target$group instead of target) barplotNul <- function( counts, group, OUT_barplotNulName, out = TRUE ){ if (out) png( file=OUT_barplotNulName ) N <- apply(counts, 2, function(x){sum(x == 0)})/nrow(counts) barplot(N, col=as.integer(group)+1, main = "Proportion of null counts per Sample", ylim = c(0,1)) legend("topright", as.character(unique(group)), lty=1, col=as.integer(unique(group))+1) if (out) dev.off() }