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view SMART/DiffExpAnal/DESeqTools/MAplotDE.R @ 33:aa0420172fc6

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author m-zytnicki
date Tue, 30 Apr 2013 14:34:53 -0400
parents 94ab73e8a190
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# MAplotDE
# MAplot of DE genes

# input : res, alpha,OUT_MAplotDEName 
# output : MAplot (png)

MAplotDE <- function( res, alpha, OUT_MAplotDEName, out = TRUE ){

 	if (out) png( file=OUT_MAplotDEName )
  
 	plot( res$baseMean, res$log2FoldChange, pch=".", xlab="Mean expression", ylab="log2FC", main="",
  		log="x", col=ifelse(res$padj < alpha, "red", "black") )
	abline(h=0, col="red")

  	if (out) dev.off()
}