<tool id="countNumber" name="countNumber">
	<description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
	<command interpreter="perl"> countNumber.pl $input $outputCSV
	</command>

	<inputs>
		<param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/>		
	</inputs>

	<outputs>
		<data format="csv" name="outputCSV" label="countNumber Output"/>
	</outputs>

	<help>
	</help>
</tool>