Mercurial > repos > yufei-luo > s_mart
view SMART/galaxy/DiffExpAnal.xml @ 10:c081f25e1572
Updated CompareOverlappingSmallRef.py
author | m-zytnicki |
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date | Thu, 14 Mar 2013 05:25:40 -0400 |
parents | 769e306b7933 |
children |
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<tool id="testDiffExpAnal" name="Differential Expression Analysis"> <description>Differential expression analysis for sequence count data</description> <command interpreter="sh"> ../DiffExpAnal/testR.sh $inputFile $columnsOfGeneName $columnsOfCondition1 $columnsOfCondition2 $outputFileCSV $outputFilePNG 2>$outputLog </command> <inputs> <param name="inputFile" type="data" label="Input File" format="tabular"/> <param name="columnsOfGeneName" type="text" value="0" label="Please indicate the column numbers of gene names with ',' separator. If There are not gene names, default value is 0."/> <param name="columnsOfCondition1" type="text" value="1,2" label="Please indicate the column numbers of condition1 with ',' separator."/> <param name="columnsOfCondition2" type="text" value="3,4" label="Please indicate the column numbers of condition2 with ',' separator."/> </inputs> <outputs> <data format="tabular" name="outputFileCSV" label="[DiffExpAnal] Output CSV File"/> <data format="png" name="outputFilePNG" label="[DiffExpAnal] Output PNG File"/> <data format="tabular" name="outputLog" label="[DiffExpAnal] Log File"/> </outputs> <help> </help> </tool>