<tool id="removeExonLines" name="remove exon lines">
  <description>Removes the lines containing Exon.</description>
	<requirements>
		<requirement type="set_environment">PYTHONPATH</requirement>
	</requirements>
  <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile  </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="gff3"/>
  </inputs>

  <outputs>
    <data format="gff3" name="outputFile" label="[remove exon line] output file"/>
  </outputs>

  <help>
	command example: sh removeExonLines.sh input.gff3
  </help>
</tool>