Mercurial > repos > yufei-luo > s_mart
view commons/core/sql/ITableMapAdaptator.py @ 14:c79b9ae3f65f
Deleted selected files
author | m-zytnicki |
---|---|
date | Fri, 19 Apr 2013 10:13:11 -0400 |
parents | 769e306b7933 |
children |
line wrap: on
line source
# Copyright INRA (Institut National de la Recherche Agronomique) # http://www.inra.fr # http://urgi.versailles.inra.fr # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. ## Interface for TableMapAdaptator # class ITableMapAdaptator(object): ## Insert a map instance # # @param obj map or set # @param delayed boolean must the insert be delayed # # @warning old name was insAMap # def insert(self, obj, delayed=False): pass ## Insert a list of Map or Set or Match instances # # @param l a list of object instances # @param delayed boolean # # @warning old name was insMapList # def insertList(self, l, delayed = False): pass ## Give a list of the distinct seqName/chr present in the table # # @return lDistinctContigNames string list # # @warning old name was getContig_name # def getSeqNameList(self): pass ## Give a list of Map instances having a given seq name # # @param seqName string seq name # @return lMap list of instances # # @warning old name was get_MapList_from_contig # def getMapListFromSeqName(self, seqName): pass ## Return a list of Set instances from a given sequence name # # @param seqName string sequence name # @return lSets list of Set instances # # @warning old name was getSetList_from_contig # def getSetListFromSeqName( self, seqName ): pass ## Give a map instances list overlapping a given region # # @param seqName string seq name # @param start integer start coordinate # @param end integer end coordinate # @return lMap list of map instances # # @warning old name was getMapList_from_qcoord # def getMapListOverlappingCoord(self, seqName, start, end): pass ## Return a list of Set instances overlapping a given region # # @param seqName string sequence name # @param start integer start coordinate # @param end integer end coordinate # @return lSet list of Set instances # # @warning old name was getSetList_from_qcoord # def getSetListOverlappingCoord( self, seqName, start, end ): pass