Mercurial > repos > yufei-luo > s_mart
view smart_toolShed/SMART/Java/FormatsContainer.java @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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/** * * Copyright INRA-URGI 2009-2010 * * This software is governed by the CeCILL license under French law and * abiding by the rules of distribution of free software. You can use, * modify and/ or redistribute the software under the terms of the CeCILL * license as circulated by CEA, CNRS and INRIA at the following URL * "http://www.cecill.info". * * As a counterpart to the access to the source code and rights to copy, * modify and redistribute granted by the license, users are provided only * with a limited warranty and the software's author, the holder of the * economic rights, and the successive licensors have only limited * liability. * * In this respect, the user's attention is drawn to the risks associated * with loading, using, modifying and/or developing or reproducing the * software by the user in light of its specific status of free software, * that may mean that it is complicated to manipulate, and that also * therefore means that it is reserved for developers and experienced * professionals having in-depth computer knowledge. Users are therefore * encouraged to load and test the software's suitability as regards their * requirements in conditions enabling the security of their systems and/or * data to be ensured and, more generally, to use and operate it in the * same conditions as regards security. * * The fact that you are presently reading this means that you have had * knowledge of the CeCILL license and that you accept its terms. * */ import java.util.*; public class FormatsContainer { HashMap < String, FormatType > formatTypes; public FormatsContainer() { this.formatTypes = new HashMap < String, FormatType > (); } public void addFormat(String type, String format) { FormatType formatType; if (formatTypes.containsKey(type)) { formatType = this.formatTypes.get(type); } else { formatType = new FormatType(type); this.formatTypes.put(type, formatType); } formatType.addFormat(format); } public Vector < String > getFormatTypes () { Vector < String > v = new Vector < String > (); v.addAll(this.formatTypes.keySet()); return v; } public FormatType getFormats (String type) { if (! formatTypes.containsKey(type)) { System.out.print("Format type " + type + " is unavailable. Got: "); Iterator it = formatTypes.entrySet().iterator(); while (it.hasNext()) { Map.Entry pairs = (Map.Entry) it.next(); System.out.print(pairs.getKey() + " "); } System.out.println(); } return formatTypes.get(type); } public String getFormatType (String format) { for (Iterator it = formatTypes.keySet().iterator(); it.hasNext(); ) { Object type = it.next(); Object formatType = formatTypes.get(type); if (((FormatType) formatType).containsFormat(format)) { return (String) type; } } return null; } }