Mercurial > repos > yufei-luo > s_mart

view smart_toolShed/SMART/galaxy/ConvertTranscriptFile_FastqToFasta.xml @ 0:e0f8dcca02ed

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
parents
children
line wrap: on
line source

<tool id="ConvertTranscriptFile_FastqToFasta" name="Fastq -> Fasta">
  <description>Convert Fastq File to Fasta File.</description>
  <command interpreter="python"> ../Java/Python/fastqToFasta.py -i $inputFile -o $outputFile 2>$logFile </command>
  <inputs>
    <param name="inputFile" type="data" label="Input File" format="fastq"/>
  </inputs>

  <outputs>
    <data format="fasta" name="outputFile" label="[fastq -> fasta] Output File"/>
    <data format="txt" name="logFile" label="[fastq -> fasta] Log File"/>
  </outputs>

  <help>
  </help>
</tool>