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view smart_toolShed/SMART/galaxy/getSequence.xml @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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<tool id="getSequence" name="get sequence">
  <description>Get a single sequence in a FASTA file.</description>
  <command interpreter="python"> ../Java/Python/getSequence.py -i $inputFile 
	-n $name
  	-o $outputFile  
  
  </command>
  
  
  <inputs>
    <param name="inputFile" type="data" label="Input fasta File" format="fasta"/>
  	<param name="name" type="text" value="None" label="name of the sequence [compulsory option]"/>
  </inputs>

  <outputs>
    <data format="fasta" name="outputFile" label="[getSequence] Output File"/>
  </outputs>

  <help>
  </help>
</tool>