Mercurial > repos > yufei-luo > s_mart
view smart_toolShed/commons/core/parsing/test/Test_WigParser.py @ 0:e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author | yufei-luo |
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date | Thu, 17 Jan 2013 10:52:14 -0500 |
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from commons.core.utils.FileUtils import FileUtils from commons.core.parsing.WigParser import WigParser import glob import unittest import os class Test_WigParser(unittest.TestCase): def tearDown(self): for file in glob.glob("data/.chr*.index"): os.remove(file) def test_GetRange1(self): self.parser = WigParser("data/test.wig") outputRange = [0.0, 1.1, 1.2, 0.0, 1.4, 1.5, 0.0, 1.7, 0.0, 1.9, 0.0] self.assertEqual(self.parser.getRange("chr1", 10, 20), outputRange) outputRange = [0.0, 9.5, 9.6, 0.0] self.assertEqual(self.parser.getRange("chrX", 4, 7), outputRange) def test_GetRange2(self): self.parser = WigParser("data/test1.wig") outputRange = [0.0, 1.1, 1.2, 0.0, 1.4, 1.5, 0.0, 1.7, 0.0, 1.9, 0.0] self.assertEqual(self.parser.getRange("chr2", 10, 20), outputRange) def test_GetRange3(self): self.parser = WigParser("data/test2.wig") outputRange = [1.4, 1.5] self.assertEqual(self.parser.getRange("chr3", 14, 15), outputRange) if __name__ == '__main__': unittest.main()