# HG changeset patch
# User m-zytnicki
# Date 1367221552 14400
# Node ID 5677346472b542a58462e0a52f4b67f87fba6e28
# Parent  c78966712a57a28158c440aec56c336d3d2a2592
Deleted selected files

diff -r c78966712a57 -r 5677346472b5 SMART/galaxy/getReadDistribution.xml
--- a/SMART/galaxy/getReadDistribution.xml	Mon Apr 29 03:44:49 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,70 +0,0 @@
-<tool id="getReadDistribution" name="get read distribution">
-	<description>Get Read Distribution v1.0.1: Plot the number of identical reads and give the most represented.</description>
-	<requirements>
-		<requirement type="set_environment">PYTHONPATH</requirement>
-	</requirements>
-	<command interpreter="python">
-		../Java/Python/WrappGetReadDistribution.py -i $formatType.inputFileName
-		#if $formatType.FormatInputFileName == 'fasta':
-			-f fasta
-		#elif $formatType.FormatInputFileName == 'fastq':
-			-f fastq	
-		#end if
-			
-		#if $optionnumber.number == 'Yes':
-			-n $optionnumber.bestNumber
-		#end if
-		#if $optionpercent.percent == 'Yes':
-			-p $optionpercent.percentage
-		#end if
-		-o $outputFile
-	</command>
-
-	<inputs>
-		<conditional name="formatType">
-			<param name="FormatInputFileName" type="select" label="Sequence input File Format ">
-				<option value="fasta">fasta</option>
-				<option value="fastq">fastq</option>
-			</param>
-			<when value="fasta">
-				<param name="inputFileName" format="fasta" type="data" label="Sequence input File"/>
-			</when>
-			<when value="fastq">
-				<param name="inputFileName" format="fastq" type="data" label="Sequence input File"/>
-			</when>
-		</conditional>
-		
-		<conditional name="optionnumber">
-			<param name="number" type="select" label="keep the best n">
-					<option value="Yes">Yes</option>
-					<option value="No" selected="true">No</option>
-			</param>
-			<when value="Yes">
-				<param name="bestNumber" type="integer" value="0"  />
-			</when>
-			<when value="No">
-			</when>
-		</conditional>
-		
-		<conditional name="optionpercent">
-			<param name="percent" type="select" label="keep the best n percentage">
-				<option value="Yes">Yes</option>
-				<option value="No" selected="true">No</option>
-			</param>
-			<when value="Yes">
-				<param name="percentage" type="integer" value="0" />
-			</when>
-			<when value="No">
-			</when>
-		</conditional>
-
-	</inputs>
-
-	<outputs>
-		<data name="outputFile" format="tar" label="[get read distribution] tar out file" help="You can not see the results directly from galaxy, but you can download this tar output file."/>
-	</outputs> 
-
-    <help>
-        This script gives a .tar out file, if you want to take look at the results, you have to download it.
-    </help>	
-</tool>