--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/transfer_convert_nextseq.xml	Wed Mar 25 13:43:47 2015 -0600
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+
+<tool id='nextseq_transfer_convert' name="Transfer and convert NextSeq run" version="1.0.0" hidden="false">
+	
+	<description>
+		Transfer and convert a NextSeq run
+	</description>
+
+	<command interpreter="perl">
+		copyNextSeq.pl $__tool_data_path__ --run $run_name --user $__user_email__ --toolDir $__tool_data_path__ --out $html_file.files_path --html $html_file --samplesheet $samplesheet --archive $sav_archive
+	</command>
+	
+	<inputs>
+		<param name="run_name" type="text" size="40" label="Run Name or Illumina Cartridge Identifier" 
+		       help="A text string unique enough to unambiguously identify the autogenerated run name from the sequencer, such as the cartridge barcode (e.g. H35VJBGXX)"/>
+		<param name="samplesheet" type="data" format="tabular" label="Illumina Sample Sheet"
+		       help="A comma separated spreadsheet with Header, Reads, Settings and Data sections defining the experimental setup, as generated using BaseSpace or Illumina Experiment Manager (IEM) v1.8.2, or later"/> 
+	</inputs>
+
+	<outputs>
+	       <data format="html" name="html_file" label="FAST QC Web report" />
+	       <data format="zip" name="sav_archive" label="SAV files archive" />
+	</outputs>
+	<help>This tools downloads a NextSeq run from the local machine and performs base call to fastq conversion, followed by QC reports on sample data, including a zipped archive with all the files required to view metrics in Illumina's SAV software.</help>
+</tool>