Mercurial > repos > yutaka-saito > bsfcall
view bin/fastq-interleave @ 0:06f8460885ff
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| author | yutaka-saito |
|---|---|
| date | Sun, 19 Apr 2015 20:51:13 +0900 |
| parents | |
| children |
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#! /bin/bash # Reads 2 fastq files, and writes them interleaved. # Assumes 1 fastq per 4 lines, i.e. no line wrapping. paste <(cat "$1" | paste - - - -) <(cat "$2" | paste - - - -) | tr '\t' '\n' # Is this better? #paste <(zcat -f "$1"|paste - - - -) <(zcat -f "$2"|paste - - - -)|tr '\t' '\n' # This does not interpret "-" as stdin: #paste <(paste - - - - < "$1") <(paste - - - - < "$2") | tr '\t' '\n'