Mercurial > repos > ziru-zhou > bamedit

comparison tool_dependencies.xml @ 5:671c4c5ce125 draft

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Uploaded
author ziru-zhou
date Tue, 18 Dec 2012 09:27:07 -0500
parents ca317b7c8d98
children 44ed69152a1e
comparison
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4:ca317b7c8d98 5:671c4c5ce125
4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> 4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment> 5 </set_environment>
6 <package name="samtools" version="0.1.12"> 6 <package name="samtools" version="0.1.12">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action> 9 <action type="shell_command">git clone https://github.com/modENCODE-DCC/Galaxy/blob/master/tool_shed_dependencies/bamedit/samtoolspkg.tar</action>
10 <action type="shell_command">chmod ago+x samtools</action> 10 <action type="shell_command">chmod ago+x samtools</action>
11 <action type="shell_command">chmod ago+x maq2sam-long</action> 11 <action type="shell_command">chmod ago+x maq2sam-long</action>
12 <action type="move_file"> 12 <action type="move_file">
13 <source>samtools</source> 13 <source>samtools</source>
14 <destination>$INSTALL_DIR/bin</destination> 14 <destination>$INSTALL_DIR/bin</destination>