| Previous changeset 5:f798da48a30d (2013-07-22) Next changeset 7:353be5809eeb (2014-01-27) |
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Commit message:
Fixing to change in WebAPI |
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modified:
synapse_interface/synapse_create.xml synapse_interface/synapse_download.xml synapse_interface/synapse_query.xml synapse_interface/tool_dependencies.xml |
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removed:
synapse_interface/._synapse_create.xml synapse_interface/._synapse_download.xml synapse_interface/._synapse_query.xml |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/._synapse_create.xml |
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| Binary file synapse_interface/._synapse_create.xml has changed |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/._synapse_download.xml |
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| Binary file synapse_interface/._synapse_download.xml has changed |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/._synapse_query.xml |
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| Binary file synapse_interface/._synapse_query.xml has changed |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/synapse_create.xml --- a/synapse_interface/synapse_create.xml Mon Jul 22 17:43:48 2013 -0400 +++ b/synapse_interface/synapse_create.xml Wed Dec 11 17:57:08 2013 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="synapse_upload" name="Synapse Upload" version="3.0.0"> +<tool id="synapse_upload" name="Synapse Upload" version="3.0.1"> <description>Create Synapse</description> <requirements> - <requirement type="package" version="0.3.0">synapseclient</requirement> + <requirement type="package" version="0.5.1">synapseclient</requirement> </requirements> <command interpreter="python">synapse_galaxy_client.py upload $script_file $etype @@ -120,7 +120,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_upload&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_upload&" target="_blank">at Synapse</a> </help> |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/synapse_download.xml --- a/synapse_interface/synapse_download.xml Mon Jul 22 17:43:48 2013 -0400 +++ b/synapse_interface/synapse_download.xml Wed Dec 11 17:57:08 2013 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="synapse_download" name="Synapse Download" version="3.0.0"> +<tool id="synapse_download" name="Synapse Download" version="3.0.1"> <description>Download Synapse Entity</description> <requirements> - <requirement type="package" version="0.3.0">synapseclient</requirement> + <requirement type="package" version="0.5.1">synapseclient</requirement> </requirements> <command interpreter="python">synapse_galaxy_client.py get $script_file $synid $outfile</command> <request_param_translation> @@ -42,7 +42,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_download&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_download&" target="_blank">at Synapse</a> </help> </tool> |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/synapse_query.xml --- a/synapse_interface/synapse_query.xml Mon Jul 22 17:43:48 2013 -0400 +++ b/synapse_interface/synapse_query.xml Wed Dec 11 17:57:08 2013 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="synapse_query" name="Synapse Query" version="3.0.0"> +<tool id="synapse_query" name="Synapse Query" version="3.0.1"> <description>Query Synapse</description> <requirements> - <requirement type="package" version="0.3.0">synapseclient</requirement> + <requirement type="package" version="0.5.1">synapseclient</requirement> </requirements> <command interpreter="python">synapse_galaxy_client.py query $script_file $query_file $outfile</command> <request_param_translation> @@ -48,7 +48,7 @@ .. |location_link| raw:: html - <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=https://www.google.com/accounts/o8/id&RETURN_TO_URL=${host_url}?tool_id=synapse_query&" target="_blank">at Synapse</a> + <a href="https://synapse.sagebase.org/Portal/openid?OPEN_ID_PROVIDER=GOOGLE&RETURN_TO_URL=${host_url}?tool_id=synapse_query&" target="_blank">at Synapse</a> Example Query: |
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| diff -r f798da48a30d -r 131300efb435 synapse_interface/tool_dependencies.xml --- a/synapse_interface/tool_dependencies.xml Mon Jul 22 17:43:48 2013 -0400 +++ b/synapse_interface/tool_dependencies.xml Wed Dec 11 17:57:08 2013 -0500 |
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| @@ -1,13 +1,13 @@ <?xml version="1.0"?> <tool_dependency> - <package name="synapseclient" version="0.3.0"> + <package name="synapseclient" version="0.5.1"> <install version="1.0"> <actions> - <action type="setup_virtualenv">synapseclient == 0.3.0</action> + <action type="setup_virtualenv">synapseclient == 0.5.1</action> </actions> </install> <readme> A client for Synapse, a collaborative compute space that allows scientists to share and analyze data together. Synapse brings together scientific data, tools, and disease models into a commons that enables true collaborative research. The platform consists of a web portal, web services, and integration with data analysis tools such as R, python, Galaxy and Java. </readme> </package> -</tool_dependency> \ No newline at end of file +</tool_dependency> |