| Previous changeset 18:949a30f04d9b (2016-11-28) Next changeset 20:ba2511ebd36a (2016-11-28) |
|
Commit message:
Uploaded |
|
modified:
shm_csr.xml |
| b |
| diff -r 949a30f04d9b -r fff3c83ec9b8 shm_csr.xml --- a/shm_csr.xml Mon Nov 28 04:41:22 2016 -0500 +++ b/shm_csr.xml Mon Nov 28 05:15:16 2016 -0500 |
| b |
| @@ -1,7 +1,7 @@ <tool id="shm_csr" name="SHM & CSR pipeline" version="1.0"> <description></description> <command interpreter="bash"> - wrapper.sh $in_file custom $out_file $out_file.files_path ${in_file.name} "-" $functionality $unique $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $filter_uniques $class_filter $empty_region_filter $fast + wrapper.sh $in_file custom $out_file $out_file.files_path ${in_file.name} "-" $functionality $unique $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $filter_uniques $class_filter_cond.class_filter $empty_region_filter $fast </command> <inputs> <param name="in_file" type="data" label="IMGT zip file to be analysed" /> @@ -48,14 +48,10 @@ <option value="no" selected="true">No</option> </param> </conditional> - - <param name="fast" type="select" label="Fast" help="Skips generating the new ZIP files and Change-O/Baseline" > <option value="yes">Yes</option> <option value="no" selected="true">No</option> </param> - - </inputs> <outputs> <data format="html" name="out_file" label = "SHM & CSR on ${in_file.name}"/> |