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Repository shm_csr
Name: shm_csr
Synopsis: Somatic hypermutation and class switch recombination pipeline
Performs a summary/analysis of an IMGT HighV-QUEST  (https://www.imgt.org/HighV-QUEST/) ZIP file for Somatic hypermutation and class switch recombination.
Development repository: https://github.com/LUMC/shm_csr
Type: unrestricted
Revision: 99:5b79485234e1
This revision can be installed: True
Times cloned / installed: 1100

Repository README files - may contain important installation or license information

This archive should contain 6 following files in CSV format:

1_Summary.txt: the synthesis of the analysis
3_Nt-sequences.txt: includes the ungapped nt sequences of all described labels
4_IMGT-gapped-AA-sequences.txt: includes the AA sequences of labels that have been gapped according to the IMGT unique numbering
5_AA-sequences.txt: includes the ungapped AA sequences of labels
8_V-REGION-nt-mutation-statistics.txt: includes the number (nb) of nt positions including IMGT gaps, the nb of nt, the nb of identical nt, ...
11_Parameters.txt: includes the date of the analysis, the IMGT/V-QUEST version, and the parameters used for the analysis

For more information on these files, please visit the IMGT/HighV-QUEST Documentation page.


Acknowledgements: this work was granted access to the HPC resources of CINES under the allocation 2013-036029 made by GENCI (Grand Equipement National de Calcul Int
ensif).
Please quote: Alamyar E., Giudicelli V., Li S., Duroux P., Lefranc M.-P. Immunome Research, 2012.

Contents of this repository

Name Description Version Minimum Galaxy Version
1.10.1 16.04

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Statistics - Tools for generating statistics
Visualization - Tools for visualizing data
Web Services - Tools enabling access to web services