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Repository cryptogenotyper
Name: cryptogenotyper
Owner: nml
Synopsis: CryptoGenotyper is a standalone tool to *in-silico* determine species and subtype based on SSU rRNA (18S) and gp60 markers.
The CryptoGenotyper is a fast and reproducible tool that can be used to classify the genotype of Cryptosporidium samples by directly analyzing the DNA electropherogram (.ab1) and FASTA files (.fasta) files that correspond to two of its characteristic gene markers (SSU rRNA and gp60)
Content homepage: https://github.com/phac-nml/CryptoGenotyper
Development repository: https://github.com/phac-nml/CryptoGenotyper
Link to this repository: https://radegast.galaxyproject.org/view/nml/cryptogenotyper/a91455432cd4
Clone this repository: hg clone https://radegast.galaxyproject.org/repos/nml/cryptogenotyper
Type: unrestricted
Revision: 2:a91455432cd4
This revision can be installed: True
Times cloned / installed: 229

Contents of this repository

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Name Description Version Minimum Galaxy Version
classifies Cryptosporidium species subtypes based on SSU rRNA and gp60 gene markers from Sanger sequencing data. 1.5.0+galaxy0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis