Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository phage_snp
Name: phage_snp
Owner: phage_snp
Synopsis: A bioinformatics tool that predicts receptor binding proteins of Staphylococcus phages and provides single-nucleotide polymorphisms within each protein and theoric impact.
Tool to extract all the Receptor Binding Proteins (RBP) and uncover the inherent polymorphisms from a Staphylococcus phage genome.
It uses sequence homology to cluster similar RBPs sequences and identify existing mutations. 
Hereon, we attribute to each polymorphism a representative score through developed and widely accepted matrices.
The lower the value more impactful this alteration.
Development repository: https://github.com/alexesperanca/PhageSNP
Link to this repository: https://radegast.galaxyproject.org/view/phage_snp/phage_snp/bcf29ed33137
Clone this repository: hg clone https://radegast.galaxyproject.org/repos/phage_snp/phage_snp
Type: unrestricted
Revision: 125:bcf29ed33137
This revision can be installed: True
Times cloned / installed: 170

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Phage Single-Nucleotide Polymorphism Finder 0.1.0 16.01

Categories
Genome annotation - Tools for annotating genomic information
Genome-Wide Association Study - Utilities to support Genome-wide association studies
Machine Learning - Tools for machine learning
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Statistics - Tools for generating statistics
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
Visualization - Tools for visualizing data