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annotate irp-gateway.xml @ 2:e98071230f9f draft

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"Made output format a zip"
author aac
date Tue, 12 Jan 2021 17:10:50 +0000
parents b25bbb79cfbf
children 8f34c9dfa7ea
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1 <?xml version="1.0"?>
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2 <!--
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3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
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4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
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5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
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6 -->
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7 <tool name="iReceptor Plus Gateway" id="irp-integration" tool_type="data_source" version="1.0.0">
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8 <description>Access the iReceptor Plus Gateway to browse AIRR-seq data.</description>
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9 <command><![CDATA[
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10 python '$__root_dir__/tools/data_source/data_source.py' '$output' $__app__.config.output_size_limit
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11 ]]></command>
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12 <inputs action="https://gateway.ireceptor.org/downloads" check_values="false" method="post">
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13 <display>Redirected to $GALAXY_URL</display>
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14 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
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15 <param name="tool_id" type="hidden" value="irp-integration" />
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16 <param name="sendToGalaxy" type="hidden" value="1" />
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17 </inputs>
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18 <request_param_translation>
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19 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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20 <request_param galaxy_name="URL" remote_name="URL" missing="" />
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21 <!-- There is currently no explicit data_type other than a .zip file. Could be upgraded in the future -->
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22 <!-- <request_param galaxy_name="data_type" remote_name="outputType" missing="zip" /> -->
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23 </request_param_translation>
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24 <outputs>
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25 <data name="output" format="zip" label="${tool.name}"/>
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26 </outputs>
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27 <options sanitize="False" refresh="True"/>
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28 </tool>