Mercurial > repos > abaizan > kodoja

diff test-data/kraken_databases.loc @ 0:18fe33eb7775 draft

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Uploaded kodoja_search.py v0.0.3 wrapper. https://github.com/abaizan/kodoja_galaxy/commit/55004d41a9c0750b2543f394594ee58cc4426609
author peterjc
date Wed, 14 Mar 2018 12:46:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kraken_databases.loc	Wed Mar 14 12:46:57 2018 -0400
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+# This is a tab-separated file listing any Kraken databases
+# available locally for tool wrapper tests.
+#
+# - Column 1 - value, the key which Galaxy will record in DB
+# - Column 2 - name, the text caption which Galaxy show users
+# - Column 3 - path, the directory name (which will contain
+#   files named ``database.idx``, ``database.kdb`` and a
+#   sub-directory named taxonomy containing files from the
+#   NCBI named ``names.dmp`` and ``nodes.dmp``
+#
+# e.g.
+#
+# plants_dec_2017(tab)Plants (December 2017)(tab)/mnt/shared/kraken_db/plants_2017_12/
+#
+kraken3viruses	Sample databse using k18 m5 and three viruses	${__HERE__}/krakenDB_test