Mercurial > repos > abaizan > kodoja
diff tool-data/kraken_databases.loc.sample @ 3:d4111d1de76f draft default tip
v0.0.8, expose kodoja_VRL.tsv output
author | peterjc |
---|---|
date | Fri, 14 Sep 2018 09:55:56 -0400 |
parents | 4554fcd4ef6d |
children |
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--- a/tool-data/kraken_databases.loc.sample Mon Sep 10 09:16:13 2018 -0400 +++ b/tool-data/kraken_databases.loc.sample Fri Sep 14 09:55:56 2018 -0400 @@ -1,6 +1,7 @@ # This is a tab-separated file listing any Kraken databases # installed locally to offer via Galaxy. # +# Expect three columns, tab separated, as follows: # - Column 1 - value, the key which Galaxy will record in DB # - Column 2 - name, the text caption which Galaxy show users # - Column 3 - path, the directory name (which will contain @@ -12,3 +13,12 @@ # kodoja at https://doi.org/10.5281/zenodo.1406071 # # kodojaDB_v1.0_kraken(tab)KodojaDB v1.0 (kraken), Sept 2018(tab)/mnt/shared/data/kodojaDB_v1.0/krakenDB +# +# Also, for backward compatibility with early versions of the +# Galaxy wrapper for Kraken, the Kodoja wrapper will also +# accept three columns as follows: +# - Column 1 - value, the key which Galaxy will record in DB +# - Column 2 - name, final part of folder name, which Galaxy +# will show the user in the drop down lists to choose from +# - Column 3 - path, parent folder name where $value/$name +# is the folder containing ``database.idx`` etc.