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0
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1 # This is a tab-separated file listing any Kraken databases
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2 # installed locally to offer via Galaxy.
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3 #
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3
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4 # Expect three columns, tab separated, as follows:
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0
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5 # - Column 1 - value, the key which Galaxy will record in DB
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6 # - Column 2 - name, the text caption which Galaxy show users
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7 # - Column 3 - path, the directory name (which will contain
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8 # files named ``database.idx``, ``database.kdb`` and a
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9 # sub-directory named taxonomy containing files from the
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10 # NCBI named ``names.dmp`` and ``nodes.dmp``
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11 #
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1
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12 # e.g. using the database provided with the kraken-using tool
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13 # kodoja at https://doi.org/10.5281/zenodo.1406071
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0
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14 #
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1
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15 # kodojaDB_v1.0_kraken(tab)KodojaDB v1.0 (kraken), Sept 2018(tab)/mnt/shared/data/kodojaDB_v1.0/krakenDB
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3
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16 #
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17 # Also, for backward compatibility with early versions of the
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18 # Galaxy wrapper for Kraken, the Kodoja wrapper will also
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19 # accept three columns as follows:
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20 # - Column 1 - value, the key which Galaxy will record in DB
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21 # - Column 2 - name, final part of folder name, which Galaxy
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22 # will show the user in the drop down lists to choose from
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23 # - Column 3 - path, parent folder name where $value/$name
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24 # is the folder containing ``database.idx`` etc.
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