Mercurial > repos > abaizan > kodoja

annotate tool-data/kraken_databases.loc.sample @ 1:4554fcd4ef6d draft

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v0.0.6
author peterjc
date Wed, 05 Sep 2018 10:44:57 -0400
parents 18fe33eb7775
children d4111d1de76f
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18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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1 # This is a tab-separated file listing any Kraken databases
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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2 # installed locally to offer via Galaxy.
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3 #
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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4 # - Column 1 - value, the key which Galaxy will record in DB
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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5 # - Column 2 - name, the text caption which Galaxy show users
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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6 # - Column 3 - path, the directory name (which will contain
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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7 # files named ``database.idx``, ``database.kdb`` and a
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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8 # sub-directory named taxonomy containing files from the
18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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9 # NCBI named ``names.dmp`` and ``nodes.dmp``
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10 #
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11 # e.g. using the database provided with the kraken-using tool
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12 # kodoja at https://doi.org/10.5281/zenodo.1406071
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18fe33eb7775 Uploaded kodoja_search.py v0.0.3 wrapper.
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13 #
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14 # kodojaDB_v1.0_kraken(tab)KodojaDB v1.0 (kraken), Sept 2018(tab)/mnt/shared/data/kodojaDB_v1.0/krakenDB