Mercurial > repos > abims-sbr > cds_search

diff test-data/cds_search.log @ 0:eb95bf7f90ae draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author abims-sbr
date Fri, 01 Feb 2019 10:26:37 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cds_search.log	Fri Feb 01 10:26:37 2019 -0500
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+*************** CDS detection ***************
+
+Files processed: 4
+	Files with CDS: 2
+		Files with CDS plus M (codon start): 1
+	Files without CDS: 2 
+
+
+
+In locus with CDS regardless of the Methionine : 
+
+*************** 1st filter : selection of the locus ***************
+
+Total number of locus recorded  = 2
+	Number of locus with 1 species : 1
+	Number of locus with 2 species : 0
+Number of locus excluded (exclude if not at least 2 species in the alignment)= 1
+
+*************** 2nd Filter : removal of the indel ***************
+
+Total number of locus recorded  = 1
+	Total number of locus with no indels (SAVED) = 1
+	Total number of locus, when removing indel, wich are empty (EXCLUDED) = 0
+