Mercurial > repos > abims-sbr > cds_search
view scripts/dico.py @ 0:eb95bf7f90ae draft
planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author | abims-sbr |
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date | Fri, 01 Feb 2019 10:26:37 -0500 |
parents | |
children | c79bdda8abfb |
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import string, itertools def dico(F1): dicoco = {} with open(F1, "r") as file: for name, query in itertools.izip_longest(*[file]*2): if name[0] == ">": fasta_name_query = name[:-1] Sn = string.split(fasta_name_query, "||") fasta_name_query = Sn[0] fasta_seq_query = query[:-1] dicoco[fasta_name_query] = fasta_seq_query return(dicoco)