Mercurial > repos > abims-sbr > cds_search

annotate scripts/dico.py @ 0:eb95bf7f90ae draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
author abims-sbr
date Fri, 01 Feb 2019 10:26:37 -0500
parents
children c79bdda8abfb
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0
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
1 import string, itertools
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
2
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
3 def dico(F1):
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
4 dicoco = {}
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
5 with open(F1, "r") as file:
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
6 for name, query in itertools.izip_longest(*[file]*2):
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
7 if name[0] == ">":
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
8 fasta_name_query = name[:-1]
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
9 Sn = string.split(fasta_name_query, "||")
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
10 fasta_name_query = Sn[0]
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
11 fasta_seq_query = query[:-1]
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
12 dicoco[fasta_name_query] = fasta_seq_query
eb95bf7f90ae planemo upload for repository https://github.com/abims-sbr/adaptsearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1-dirty
abims-sbr
parents:
diff changeset
13 return(dicoco)