Mercurial > repos > abims-sbr > oligator

comparison test-data/oligator_results.csv @ 0:a811f7256f6e draft default tip

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planemo upload for repository https://github.com/abims-sbr/tools-abims/tree/master/tools/oligator commit b7e63a01570e9fc381abb01d5b176fcea024e251
author abims-sbr
date Fri, 27 Apr 2018 08:42:52 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:a811f7256f6e
1 zga_344_GH3
2 CAAGATAAAGCACGACCTTCCGAC
3 Tm = 72
4 The oligo length is 24 nucleotide(s)
5
6 zga_344_Fn3
7 GAAACGGTGGTCCAACTGTATGTG
8 Tm = 72
9 The oligo length is 24 nucleotide(s)
10
11 zga_347_GH3
12 CAAAGCAAGCAAAAGATATATCACAAA
13 Tm = 70
14 The oligo length is 27 nucleotide(s)
15
16 zga_347_Fn3
17 GAAATCGTTCAGCTTTATTTTTCGGA
18 Tm = 70
19 The oligo length is 26 nucleotide(s)
20
21 zga_3720_GH3
22 AGTAGTACCCTACCCTATATCGAAG
23 Tm = 72
24 The oligo length is 25 nucleotide(s)
25
26 zga_3720_UNK
27 AGCCTAAACCTAAAAATAGCCGAAAA
28 Tm = 70
29 The oligo length is 26 nucleotide(s)
30
31 zga_3745_GH3
32 CAACATCCTTTGGTGACCAAAGAC
33 Tm = 70
34 The oligo length is 24 nucleotide(s)
35
36 zga_3745_linker
37 GACCTGAATTCGAGAACCGATGAC
38 Tm = 72
39 The oligo length is 24 nucleotide(s)
40
41 zga_3745_beta
42 CAGTTGATTTTCGGGGCCATCCC
43 Tm = 72
44 The oligo length is 23 nucleotide(s)
45
46 zga_3745_GH3linker
47 CAACATCCTTTGGTGACCAAAGAC
48 Tm = 70
49 The oligo length is 24 nucleotide(s)
50
51 zga_3818_GH3
52 CAAGAAACGATAGAAGCGGTGGAG
53 Tm = 72
54 The oligo length is 24 nucleotide(s)
55
56 zga_3818_Fn3
57 GTGGTACAGTTATATCTACGGGATG
58 Tm = 72
59 The oligo length is 25 nucleotide(s)
60
61 zga_42
62 TGTAAGGAAGAGCGAAAAGAAATTATA
63 Tm = 70
64 The oligo length is 27 nucleotide(s)
65
66 zga_369
67 TGTTCGAGTGATGATGACCAATCG
68 Tm = 70
69 The oligo length is 24 nucleotide(s)
70
71 zga_518_CBM48
72 CCGCAAGTTACCGTTTTCAGTCTT
73 Tm = 70
74 The oligo length is 24 nucleotide(s)
75
76 zga_518_GH13
77 GATAAGGACGGAAATTTTCTCACTTA
78 Tm = 70
79 The oligo length is 26 nucleotide(s)
80
81 zga_530
82 TACGAAAACACCGAACGAAAATGGT
83 Tm = 70
84 The oligo length is 25 nucleotide(s)
85
86 zga_1248
87 GGCGGAAGTAAAAAAAAGGTCGTTT
88 Tm = 70
89 The oligo length is 25 nucleotide(s)
90
91 zga_1626
92 GATTGCGCCATTTTTTATCATATTTATC
93 Tm = 72
94 The oligo length is 28 nucleotide(s)
95
96 zga_314
97 TGCTCCAATTCCGAAATCAAGGTAG
98 Tm = 72
99 The oligo length is 25 nucleotide(s)
100
101 zga_316
102 TGTGGAGCAGTGAAAAAAACGGATA
103 Tm = 70
104 The oligo length is 25 nucleotide(s)
105
106 zga_355
107 TGTTCGGGAGATAAGAACATGGAG
108 Tm = 70
109 The oligo length is 24 nucleotide(s)
110
111 zga_368
112 CAACAATTGAAATCGCCCAACGGT
113 Tm = 70
114 The oligo length is 24 nucleotide(s)
115
116 zga_2429
117 TGTAAAGTGCCTTCCCATACTTATAT
118 Tm = 70
119 The oligo length is 26 nucleotide(s)
120
121 zga_3602
122 TGCAAAAATGCGACCGAGGAAAAAA
123 Tm = 70
124 The oligo length is 25 nucleotide(s)
125
126 zga_4653
127 AAAATATCAGCAATAAAAACATACCCTA
128 Tm = 70
129 The oligo length is 28 nucleotide(s)
130
131 zga_4655
132 TGTGGCCGCGAGCCGTCAAATG
133 Tm = 72
134 The oligo length is 22 nucleotide(s)
135
136 zga_4657
137 AAAACGACACAGACAGATTTCGGTG
138 Tm = 72
139 The oligo length is 25 nucleotide(s)
140
141 zga_4658
142 GGTACAAGTATAAAATCGGTTGACTG
143 Tm = 72
144 The oligo length is 26 nucleotide(s)
145
146 zga_4661
147 AGCATATTGAATCAATTTAGCCTGAAA
148 Tm = 70
149 The oligo length is 27 nucleotide(s)
150
151 zga_4662
152 AAAGCAACTGTTTACAAAGGAAACAAA
153 Tm = 70
154 The oligo length is 27 nucleotide(s)
155
156 zga_4668
157 TGTAGTGATGATTTTCTTAATGAGGAG
158 Tm = 72
159 The oligo length is 27 nucleotide(s)
160
161 zga_3523
162 AAATTTAAGCCAGTGGTAAAACATGTA
163 Tm = 70
164 The oligo length is 27 nucleotide(s)
165
166 zga_3572
167 GAATATGAGGCGCCCTTCCCCT
168 Tm = 70
169 The oligo length is 22 nucleotide(s)
170
171 zga_3629
172 CAAGAAAAACCGAACATCATCCTTTT
173 Tm = 70
174 The oligo length is 26 nucleotide(s)
175
176 zga_517
177 ATAACCAATACTGAGCTAGAATATAAAG
178 Tm = 72
179 The oligo length is 28 nucleotide(s)
180
181 RB12343
182 GAATTGTGGGATCATCGCGACGT
183 Tm = 70
184 The oligo length is 23 nucleotide(s)
185
186 RB548
187 AGTTTTGCGATGGTTGATTCGCTG
188 Tm = 70
189 The oligo length is 24 nucleotide(s)
190
191 RB2638
192 AATTCGCAGCTTTCATTATCGACCA
193 Tm = 70
194 The oligo length is 25 nucleotide(s)
195
196 RB2986
197 CATGGGCGGAACATGGCGACTG
198 Tm = 72
199 The oligo length is 22 nucleotide(s)
200
201 RB4894
202 GATTTGAATTCGCAACGTCGTGTTT
203 Tm = 70
204 The oligo length is 25 nucleotide(s)
205
206 RB5196
207 ACCATGAACGCAATGCTCACCAAC
208 Tm = 72
209 The oligo length is 24 nucleotide(s)
210
211 RB5200_S6PP
212 AATTCCACGATCGCATCCAACCC
213 Tm = 70
214 The oligo length is 23 nucleotide(s)
215
216 RB5200_GH13
217 ACGTCGCCCCTCAATGCGACC
218 Tm = 70
219 The oligo length is 21 nucleotide(s)
220
221 RB9292
222 GATCTTCAGTTCGCCTACTCCCC
223 Tm = 72
224 The oligo length is 23 nucleotide(s)
225
226 RB2160
227 TCGCCTCACGTTCACCTTTGCTT
228 Tm = 70
229 The oligo length is 23 nucleotide(s)
230
231 zga_4659
232 TCAGGAATTAAAGAATACCAACTATTTA
233 Tm = 70
234 The oligo length is 28 nucleotide(s)
235
236 RB10507
237 GCAGAAGAGACGACGATCGTGTC
238 Tm = 72
239 The oligo length is 23 nucleotide(s)
240
241 zga_314_antisens
242 TTTGGCGTCAGTCTTGTAGGTAATA
243 Tm = 70
244 The oligo length is 25 nucleotide(s)
245
246 zga_42_antisens
247 TTCTTTGTGTTCTAAAAGTGCGATGT
248 Tm = 70
249 The oligo length is 26 nucleotide(s)
250
251 zga_316_antisens
252 TTGCCCACTTCCTTCTAGCACAAG
253 Tm = 72
254 The oligo length is 24 nucleotide(s)
255
256 RB2638_antisens
257 GGATTCCAAACGCAGGATCGTCG
258 Tm = 72
259 The oligo length is 23 nucleotide(s)
260
261 zga_4661_antisens
262 TCTTCCCATCCAGCCACCGTCT
263 Tm = 70
264 The oligo length is 22 nucleotide(s)
265
266 RB5196_antisens
267 GACGCGGTGCAGCCACATGAAT
268 Tm = 70
269 The oligo length is 22 nucleotide(s)
270
271 zga_4662_antisens
272 TTGTTGACAATCCATAAGTACTTTCAT
273 Tm = 70
274 The oligo length is 27 nucleotide(s)
275
276 zga_3720_GH3_antisens
277 GGATGGCAAATGAAAGTCAATTCTTT
278 Tm = 70
279 The oligo length is 26 nucleotide(s)
280
281 zga_518_GH13_antisens
282 TTGAAAAATAACAATCCCCAATGGCG
283 Tm = 72
284 The oligo length is 26 nucleotide(s)
285
286 zga_355_antisens
287 TAATGCCCTAATATGGACCGCCAA
288 Tm = 70
289 The oligo length is 24 nucleotide(s)
290
291 RB5200_GH13_antisens
292 CGCGGTTGGCTCGTCATGTTCG
293 Tm = 72
294 The oligo length is 22 nucleotide(s)
295
296 zga_4668_antisens
297 CAGTGATGAATTTTGTGTCAAAACTC
298 Tm = 70
299 The oligo length is 26 nucleotide(s)
300
301 zga_3745_beta_antisens
302 ATTTACAATAGCGTCGTAAATTACTTTT
303 Tm = 70
304 The oligo length is 28 nucleotide(s)
305
306 RB4894_antisens
307 CCGTTCGACAAGCACGCAAATGG
308 Tm = 72
309 The oligo length is 23 nucleotide(s)
310
311 zga_4659_antisens
312 TGCCTTGTGTCTAATATAAAACGTCT
313 Tm = 70
314 The oligo length is 26 nucleotide(s)
315
316 zga_3629_antisens
317 TTTTTTTAAGATTAGCGGAGTTACGG
318 Tm = 70
319 The oligo length is 26 nucleotide(s)
320
321 zga_3572_antisens
322 CTCCAAACCTGATATTGCCTCGG
323 Tm = 70
324 The oligo length is 23 nucleotide(s)
325
326 RB2160_antisens
327 CGCGTTCACATGATCGTGGGATT
328 Tm = 70
329 The oligo length is 23 nucleotide(s)
330
331 RB12343_antisens
332 GGCGGTGGAAGATGACTTCAACC
333 Tm = 72
334 The oligo length is 23 nucleotide(s)
335
336 zga_3818_Fn3_antisens
337 TTTTAATCTAAAGGATGTTTTTAAATCTG
338 Tm = 70
339 The oligo length is 29 nucleotide(s)
340
341 zga_3602_antisens
342 TTTTTTGGTAAACTTTATGGTGGCAC
343 Tm = 70
344 The oligo length is 26 nucleotide(s)
345
346 RB10507_antisens
347 CTCGTTCAGCATCGGCGAAATCA
348 Tm = 70
349 The oligo length is 23 nucleotide(s)
350
351 zga_3720_UNK_antisens
352 TGACGATATGCTTACGGGCAAGG
353 Tm = 70
354 The oligo length is 23 nucleotide(s)
355
356 zga_347_Fn3_antisens
357 TATTTTCAAGTTTCCACTGACATGAAT
358 Tm = 70
359 The oligo length is 27 nucleotide(s)
360
361 zga_530_antisens
362 AAAGACCTTATAAATCGAAGCTTGATA
363 Tm = 70
364 The oligo length is 27 nucleotide(s)
365
366 zga_369_antisens
367 ATTTACTTTGGCAATAGACCAAATACT
368 Tm = 70
369 The oligo length is 27 nucleotide(s)
370
371 zga_344_Fn3_antisens
372 ATTTTTGACAGTTAAGGCTACTTTTTTG
373 Tm = 72
374 The oligo length is 28 nucleotide(s)
375
376 RB9292_antisens
377 CTTTGGCGGCGCGTTACAGACA
378 Tm = 70
379 The oligo length is 22 nucleotide(s)
380
381 zga_344_GH3_antisens
382 ATTGGTTATAGGAATATTTACCGTTGT
383 Tm = 70
384 The oligo length is 27 nucleotide(s)
385
386 zga_4658_antisens
387 TTTCGATTGAAAAGCTGCCAGTTTTT
388 Tm = 70
389 The oligo length is 26 nucleotide(s)
390
391 zga_347_GH3_antisens
392 ATTAGTAATATCCACGGAAACCACTA
393 Tm = 70
394 The oligo length is 26 nucleotide(s)
395
396 zga_4655_antisens
397 GTCCACTGCCTTGAGCTTCAACA
398 Tm = 70
399 The oligo length is 23 nucleotide(s)
400
401 zga_4657_antisens
402 CCAGTTGAATTTAAAAATCGTCGTAC
403 Tm = 70
404 The oligo length is 26 nucleotide(s)
405
406 zga_4653_antisens
407 CCAGTTGGTAAACGAGCCATCTTT
408 Tm = 70
409 The oligo length is 24 nucleotide(s)
410
411 RB548_antisens
412 CTTCCGCGTGTACACCAGAACC
413 Tm = 70
414 The oligo length is 22 nucleotide(s)
415
416 zga_518_CBM48_antisens
417 GCCTTTTCCGTAACGGCCCCAT
418 Tm = 70
419 The oligo length is 22 nucleotide(s)
420
421 RB2986_antisens
422 TGAAACTTGCCCGGATTGATCTTC
423 Tm = 70
424 The oligo length is 24 nucleotide(s)
425
426 zga_2429_antisens
427 CTTCTTACTTGGTCTGATCCACATA
428 Tm = 70
429 The oligo length is 25 nucleotide(s)
430
431 zga_517_antisens
432 TTTGAACGGGAGTCCGTGTAACTT
433 Tm = 70
434 The oligo length is 24 nucleotide(s)
435
436 zga_3523_antisens
437 CTTGCTTCCGATTTTTAGTAGCACA
438 Tm = 70
439 The oligo length is 25 nucleotide(s)
440
441 RB5200_S6PP_antisens
442 TTCGATCGAGTTTTCAAACAGACCA
443 Tm = 70
444 The oligo length is 25 nucleotide(s)
445
446 zga_3745_GH3_antisens
447 GTCCTCATAAAGGTTTTTGAGCTCC
448 Tm = 72
449 The oligo length is 25 nucleotide(s)
450
451 zga_1248_antisens
452 TTTTACAATGAAAATAAAGGATTCCAAC
453 Tm = 70
454 The oligo length is 28 nucleotide(s)
455
456 zga_3745_linker_antisens
457 CTGTGCCAACTCGCTGTTTTGATA
458 Tm = 70
459 The oligo length is 24 nucleotide(s)
460
461 zga_368_antisens
462 TTTTTCAATTATACTTATGGCATACCC
463 Tm = 70
464 The oligo length is 27 nucleotide(s)
465
466 zga_3745_GH3linker_antisens
467 CTGTGCCAACTCGCTGTTTTGATA
468 Tm = 70
469 The oligo length is 24 nucleotide(s)
470
471 zga_1626_antisens
472 ATGGCACAAGATGCGGCCCCAA
473 Tm = 70
474 The oligo length is 22 nucleotide(s)
475
476 zga_3818_GH3_antisens
477 GCTCACCTCTACAGAAACCGAAAT
478 Tm = 70
479 The oligo length is 24 nucleotide(s)
480