Mercurial > repos > adam-novak > hexagram
comparison hexagram-6ae12361157c/hexagram/tool_dependencies.xml~ @ 0:1407e3634bcf draft default tip
Uploaded r11 from test tool shed.
| author | adam-novak |
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| date | Tue, 22 Oct 2013 14:17:59 -0400 |
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| -1:000000000000 | 0:1407e3634bcf |
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| 1 <?xml version="1.0"?> | |
| 2 <!-- | |
| 3 Defines how to install the binaries that this tool depends on (in this case, DrL). | |
| 4 Based on the examples at http://wiki.galaxyproject.org/ToolShedToolFeatures | |
| 5 and http://toolshed.g2.bx.psu.edu/repos/jjohnson/defuse/file/f65857c1b92e/tool_dependencies.xml | |
| 6 --> | |
| 7 <tool_dependency> | |
| 8 <package name="drl-graph-layout" version="1.1"> | |
| 9 <install version="1.0"><!-- This is the install tag version, not the package version --> | |
| 10 <actions> | |
| 11 <action type="shell_command">hg clone https://bitbucket.org/adam_novak/drl-graph-layout</action> | |
| 12 <!-- | |
| 13 TODO: We're supposed to copy the right Configuration.mk | |
| 14 file. Not doing so assumes our system is GNU. | |
| 15 --> | |
| 16 <action type="shell_command">hg up -r drl-graph-layout-1.1</action> | |
| 17 <action type="shell_command">make</action> | |
| 18 <action type="move_directory_files"> | |
| 19 <source_directory>bin</source_directory> | |
| 20 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
| 21 </action> | |
| 22 <!-- | |
| 23 Now we can access DrL tools like truncate (at the expense of | |
| 24 GNU truncate) | |
| 25 --> | |
| 26 <!-- | |
| 27 TODO: report to Galaxy that comments as the last element of | |
| 28 a set_enviromnent action atag are not properly handeled. | |
| 29 See install_util.py line 435 in revision 9d42f1e32efb | |
| 30 --> | |
| 31 <action type="set_environment"> | |
| 32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 33 </action> | |
| 34 </actions> | |
| 35 </install> | |
| 36 <readme> | |
| 37 This installs the latest DrL Graph Layout tool from Adam Novak's Bitbucket, because Shawn Martin has stopped maintaining it. | |
| 38 </readme> | |
| 39 </package> | |
| 40 </tool_dependency> |