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1 <?xml version="1.0"?>
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2 <!--
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3 Defines how to install the binaries that this tool depends on (in this case, DrL).
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4 Based on the examples at http://wiki.galaxyproject.org/ToolShedToolFeatures
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5 and http://toolshed.g2.bx.psu.edu/repos/jjohnson/defuse/file/f65857c1b92e/tool_dependencies.xml
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6 -->
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7 <tool_dependency>
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8 <package name="drl-graph-layout" version="1.1">
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9 <install version="1.0"><!-- This is the install tag version, not the package version -->
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10 <actions>
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11 <action type="shell_command">hg clone https://bitbucket.org/adam_novak/drl-graph-layout</action>
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12 <!--
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13 TODO: We're supposed to copy the right Configuration.mk
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14 file. Not doing so assumes our system is GNU.
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15 -->
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16 <action type="shell_command">hg up -r drl-graph-layout-1.1</action>
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17 <action type="shell_command">make</action>
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18 <action type="move_directory_files">
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19 <source_directory>bin</source_directory>
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20 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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21 </action>
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22 <!--
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23 Now we can access DrL tools like truncate (at the expense of
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24 GNU truncate)
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25 -->
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26 <!--
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27 TODO: report to Galaxy that comments as the last element of
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28 a set_enviromnent action atag are not properly handeled.
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29 See install_util.py line 435 in revision 9d42f1e32efb
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30 -->
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31 <action type="set_environment">
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32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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33 </action>
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34 </actions>
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35 </install>
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36 <readme>
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37 This installs the latest DrL Graph Layout tool from Adam Novak's Bitbucket, because Shawn Martin has stopped maintaining it.
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38 </readme>
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39 </package>
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40 </tool_dependency>
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