Mercurial > repos > ahosny > cnvsim
changeset 16:7e8047d291e4 draft
Uploaded
| author | ahosny |
|---|---|
| date | Wed, 07 Sep 2016 09:34:53 -0400 |
| parents | 302eb5118a36 |
| children | e4ebf3435054 |
| files | cnvsim/tmpCHFuG4 |
| diffstat | 1 files changed, 658 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cnvsim/tmpCHFuG4 Wed Sep 07 09:34:53 2016 -0400 @@ -0,0 +1,658 @@ + + + + +<!DOCTYPE html> +<html lang="en" class=""> + <head prefix="og: http://ogp.me/ns# fb: http://ogp.me/ns/fb# object: http://ogp.me/ns/object# article: http://ogp.me/ns/article# profile: http://ogp.me/ns/profile#"> + <meta charset='utf-8'> + + + <link crossorigin="anonymous" href="https://assets-cdn.github.com/assets/frameworks-98550932b9f11a849da143d2dbc9dfaa977a17656514d323ae9ce0d6fa688b60.css" media="all" rel="stylesheet" /> + <link crossorigin="anonymous" href="https://assets-cdn.github.com/assets/github-725187168e58e34182fb01f3ac8053bbef45c4d3cd17bae0ff014ce04abba823.css" media="all" rel="stylesheet" /> + + + <link crossorigin="anonymous" href="https://assets-cdn.github.com/assets/site-becbb68a5e0ae3f94214b9e9edea2c49974f6d60b9eae715b70e5d017ff1b935.css" media="all" rel="stylesheet" /> + + + <link as="script" href="https://assets-cdn.github.com/assets/frameworks-88471af1fec40ff9418efbe2ddd15b6896af8d772f8179004c254dffc25ea490.js" rel="preload" /> + + <link as="script" href="https://assets-cdn.github.com/assets/github-baba95ef24d5d4fa04972b557ea4bc851965a8c18ef377a55f9cc1bbfc651d92.js" rel="preload" /> + + <meta http-equiv="X-UA-Compatible" content="IE=edge"> + <meta http-equiv="Content-Language" content="en"> + <meta name="viewport" content="width=device-width"> + + <title>CNV-Sim/cnvsim at master · NabaviLab/CNV-Sim · GitHub</title> + <link rel="search" type="application/opensearchdescription+xml" href="/opensearch.xml" title="GitHub"> + <link rel="fluid-icon" href="https://github.com/fluidicon.png" title="GitHub"> + <link rel="apple-touch-icon" href="/apple-touch-icon.png"> + <link rel="apple-touch-icon" sizes="57x57" href="/apple-touch-icon-57x57.png"> + <link rel="apple-touch-icon" sizes="60x60" href="/apple-touch-icon-60x60.png"> + <link rel="apple-touch-icon" sizes="72x72" href="/apple-touch-icon-72x72.png"> + <link rel="apple-touch-icon" sizes="76x76" href="/apple-touch-icon-76x76.png"> + <link rel="apple-touch-icon" sizes="114x114" href="/apple-touch-icon-114x114.png"> + <link rel="apple-touch-icon" sizes="120x120" href="/apple-touch-icon-120x120.png"> + <link rel="apple-touch-icon" sizes="144x144" href="/apple-touch-icon-144x144.png"> + <link rel="apple-touch-icon" sizes="152x152" href="/apple-touch-icon-152x152.png"> + <link rel="apple-touch-icon" sizes="180x180" href="/apple-touch-icon-180x180.png"> + <meta property="fb:app_id" content="1401488693436528"> + + <meta content="https://avatars2.githubusercontent.com/u/18650749?v=3&s=400" name="twitter:image:src" /><meta content="@github" name="twitter:site" /><meta content="summary" name="twitter:card" /><meta content="NabaviLab/CNV-Sim" name="twitter:title" /><meta content="CNV-Sim - Copy Number Variations (CNV) Simulator" name="twitter:description" /> + <meta content="https://avatars2.githubusercontent.com/u/18650749?v=3&s=400" property="og:image" /><meta content="GitHub" property="og:site_name" /><meta content="object" property="og:type" /><meta content="NabaviLab/CNV-Sim" property="og:title" /><meta content="https://github.com/NabaviLab/CNV-Sim" property="og:url" /><meta content="CNV-Sim - Copy Number Variations (CNV) Simulator" property="og:description" /> + <meta name="browser-stats-url" content="https://api.github.com/_private/browser/stats"> + <meta name="browser-errors-url" content="https://api.github.com/_private/browser/errors"> + <link rel="assets" href="https://assets-cdn.github.com/"> + + <meta name="pjax-timeout" content="1000"> + + <meta name="request-id" content="8076FA05:02B6:7016792:57D0177C" data-pjax-transient> + + <meta name="msapplication-TileImage" content="/windows-tile.png"> + <meta name="msapplication-TileColor" content="#ffffff"> + <meta name="selected-link" value="repo_source" data-pjax-transient> + + <meta name="google-site-verification" content="KT5gs8h0wvaagLKAVWq8bbeNwnZZK1r1XQysX3xurLU"> +<meta name="google-site-verification" content="ZzhVyEFwb7w3e0-uOTltm8Jsck2F5StVihD0exw2fsA"> + <meta name="google-analytics" content="UA-3769691-2"> + +<meta content="collector.githubapp.com" name="octolytics-host" /><meta content="github" name="octolytics-app-id" /><meta content="8076FA05:02B6:7016792:57D0177C" name="octolytics-dimension-request_id" /> +<meta content="/<user-name>/<repo-name>/files/disambiguate" data-pjax-transient="true" name="analytics-location" /> + + + + <meta class="js-ga-set" name="dimension1" content="Logged Out"> + + + + <meta name="hostname" content="github.com"> + <meta name="user-login" content=""> + + <meta name="expected-hostname" content="github.com"> + <meta name="js-proxy-site-detection-payload" content="N2I1YjY5ZGFlN2ZmNjJhNDRkMzgzNjUxNWMzZTkzZTI5ZDIzZGM3MDNhNTkyNjgyMjI0MmRjZDJkN2Y4N2I3Ynx7InJlbW90ZV9hZGRyZXNzIjoiMTI4LjExOC4yNTAuNSIsInJlcXVlc3RfaWQiOiI4MDc2RkEwNTowMkI2OjcwMTY3OTI6NTdEMDE3N0MiLCJ0aW1lc3RhbXAiOjE0NzMyNTUyOTJ9"> + + + <link rel="mask-icon" href="https://assets-cdn.github.com/pinned-octocat.svg" color="#4078c0"> + <link rel="icon" type="image/x-icon" href="https://assets-cdn.github.com/favicon.ico"> + + <meta name="html-safe-nonce" content="6613586e151810621f8212214deffc52bd6bd9c7"> + <meta content="3d0aad3b69c36e81ffb7cc2e9861d27135549e1f" name="form-nonce" /> + + <meta http-equiv="x-pjax-version" content="6753d966b78387f25a63956a23dabd72"> + + + + <meta name="description" content="CNV-Sim - Copy Number Variations (CNV) Simulator"> + <meta name="go-import" content="github.com/NabaviLab/CNV-Sim git https://github.com/NabaviLab/CNV-Sim.git"> + + <meta content="18650749" name="octolytics-dimension-user_id" /><meta content="NabaviLab" name="octolytics-dimension-user_login" /><meta content="58075333" name="octolytics-dimension-repository_id" /><meta content="NabaviLab/CNV-Sim" name="octolytics-dimension-repository_nwo" /><meta content="true" name="octolytics-dimension-repository_public" /><meta content="false" name="octolytics-dimension-repository_is_fork" /><meta content="58075333" name="octolytics-dimension-repository_network_root_id" /><meta content="NabaviLab/CNV-Sim" name="octolytics-dimension-repository_network_root_nwo" /> + <link href="https://github.com/NabaviLab/CNV-Sim/commits/master.atom" rel="alternate" title="Recent Commits to CNV-Sim:master" type="application/atom+xml"> + + + <link rel="canonical" href="https://github.com/NabaviLab/CNV-Sim/tree/master/cnvsim" data-pjax-transient> + </head> + + + <body class="logged-out env-production vis-public"> + <div id="js-pjax-loader-bar" class="pjax-loader-bar"><div class="progress"></div></div> + <a href="#start-of-content" tabindex="1" class="accessibility-aid js-skip-to-content">Skip to content</a> + + + + + + + + <header class="site-header js-details-container" role="banner"> + <div class="container-responsive"> + <a class="header-logo-invertocat" href="https://github.com/" aria-label="Homepage" data-ga-click="(Logged out) Header, go to homepage, icon:logo-wordmark"> + <svg aria-hidden="true" class="octicon octicon-mark-github" height="32" version="1.1" viewBox="0 0 16 16" width="32"><path d="M8 0C3.58 0 0 3.58 0 8c0 3.54 2.29 6.53 5.47 7.59.4.07.55-.17.55-.38 0-.19-.01-.82-.01-1.49-2.01.37-2.53-.49-2.69-.94-.09-.23-.48-.94-.82-1.13-.28-.15-.68-.52-.01-.53.63-.01 1.08.58 1.23.82.72 1.21 1.87.87 2.33.66.07-.52.28-.87.51-1.07-1.78-.2-3.64-.89-3.64-3.95 0-.87.31-1.59.82-2.15-.08-.2-.36-1.02.08-2.12 0 0 .67-.21 2.2.82.64-.18 1.32-.27 2-.27.68 0 1.36.09 2 .27 1.53-1.04 2.2-.82 2.2-.82.44 1.1.16 1.92.08 2.12.51.56.82 1.27.82 2.15 0 3.07-1.87 3.75-3.65 3.95.29.25.54.73.54 1.48 0 1.07-.01 1.93-.01 2.2 0 .21.15.46.55.38A8.013 8.013 0 0 0 16 8c0-4.42-3.58-8-8-8z"></path></svg> + </a> + + <button class="btn-link float-right site-header-toggle js-details-target" type="button" aria-label="Toggle navigation"> + <svg aria-hidden="true" class="octicon octicon-three-bars" height="24" version="1.1" viewBox="0 0 12 16" width="18"><path d="M11.41 9H.59C0 9 0 8.59 0 8c0-.59 0-1 .59-1H11.4c.59 0 .59.41.59 1 0 .59 0 1-.59 1h.01zm0-4H.59C0 5 0 4.59 0 4c0-.59 0-1 .59-1H11.4c.59 0 .59.41.59 1 0 .59 0 1-.59 1h.01zM.59 11H11.4c.59 0 .59.41.59 1 0 .59 0 1-.59 1H.59C0 13 0 12.59 0 12c0-.59 0-1 .59-1z"></path></svg> + </button> + + <div class="site-header-menu"> + <nav class="site-header-nav site-header-nav-main"> + <a href="/personal" class="js-selected-navigation-item nav-item nav-item-personal" data-ga-click="Header, click, Nav menu - item:personal" data-selected-links="/personal /personal"> + Personal +</a> <a href="/open-source" class="js-selected-navigation-item nav-item nav-item-opensource" data-ga-click="Header, click, Nav menu - item:opensource" data-selected-links="/open-source /open-source"> + Open source +</a> <a href="/business" class="js-selected-navigation-item nav-item nav-item-business" data-ga-click="Header, click, Nav menu - item:business" data-selected-links="/business /business/partners /business/features /business/customers /business"> + Business +</a> <a href="/explore" class="js-selected-navigation-item nav-item nav-item-explore" data-ga-click="Header, click, Nav menu - item:explore" data-selected-links="/explore /trending /trending/developers /integrations /integrations/feature/code /integrations/feature/collaborate /integrations/feature/ship /explore"> + Explore +</a> </nav> + + <div class="site-header-actions"> + <a class="btn btn-primary site-header-actions-btn" href="/join?source=header-repo" data-ga-click="(Logged out) Header, clicked Sign up, text:sign-up">Sign up</a> + <a class="btn site-header-actions-btn mr-2" href="/login?return_to=%2FNabaviLab%2FCNV-Sim%2Ftree%2Fmaster%2Fcnvsim" data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in">Sign in</a> + </div> + + <nav class="site-header-nav site-header-nav-secondary"> + <a class="nav-item" href="/pricing">Pricing</a> + <a class="nav-item" href="/blog">Blog</a> + <a class="nav-item" href="https://help.github.com">Support</a> + <a class="nav-item header-search-link" href="https://github.com/search">Search GitHub</a> + <div class="header-search scoped-search site-scoped-search js-site-search" role="search"> + <!-- </textarea> --><!-- '"` --><form accept-charset="UTF-8" action="/NabaviLab/CNV-Sim/search" class="js-site-search-form" data-scoped-search-url="/NabaviLab/CNV-Sim/search" data-unscoped-search-url="/search" method="get"><div style="margin:0;padding:0;display:inline"><input name="utf8" type="hidden" value="✓" /></div> + <label class="form-control header-search-wrapper js-chromeless-input-container"> + <div class="header-search-scope">This repository</div> + <input type="text" + class="form-control header-search-input js-site-search-focus js-site-search-field is-clearable" + data-hotkey="s" + name="q" + placeholder="Search" + aria-label="Search this repository" + data-unscoped-placeholder="Search GitHub" + data-scoped-placeholder="Search" + autocapitalize="off"> + </label> +</form></div> + + </nav> + </div> + </div> +</header> + + + + <div id="start-of-content" class="accessibility-aid"></div> + + <div id="js-flash-container"> +</div> + + + <div role="main"> + <div itemscope itemtype="http://schema.org/SoftwareSourceCode"> + <div id="js-repo-pjax-container" data-pjax-container> + +<div class="pagehead repohead instapaper_ignore readability-menu experiment-repo-nav"> + <div class="container repohead-details-container"> + + + +<ul class="pagehead-actions"> + + <li> + <a href="/login?return_to=%2FNabaviLab%2FCNV-Sim" + class="btn btn-sm btn-with-count tooltipped tooltipped-n" + aria-label="You must be signed in to watch a repository" rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-eye" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path d="M8.06 2C3 2 0 8 0 8s3 6 8.06 6C13 14 16 8 16 8s-3-6-7.94-6zM8 12c-2.2 0-4-1.78-4-4 0-2.2 1.8-4 4-4 2.22 0 4 1.8 4 4 0 2.22-1.78 4-4 4zm2-4c0 1.11-.89 2-2 2-1.11 0-2-.89-2-2 0-1.11.89-2 2-2 1.11 0 2 .89 2 2z"></path></svg> + Watch + </a> + <a class="social-count" href="/NabaviLab/CNV-Sim/watchers" + aria-label="2 users are watching this repository"> + 2 + </a> + + </li> + + <li> + <a href="/login?return_to=%2FNabaviLab%2FCNV-Sim" + class="btn btn-sm btn-with-count tooltipped tooltipped-n" + aria-label="You must be signed in to star a repository" rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-star" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M14 6l-4.9-.64L7 1 4.9 5.36 0 6l3.6 3.26L2.67 14 7 11.67 11.33 14l-.93-4.74z"></path></svg> + Star + </a> + + <a class="social-count js-social-count" href="/NabaviLab/CNV-Sim/stargazers" + aria-label="1 user starred this repository"> + 1 + </a> + + </li> + + <li> + <a href="/login?return_to=%2FNabaviLab%2FCNV-Sim" + class="btn btn-sm btn-with-count tooltipped tooltipped-n" + aria-label="You must be signed in to fork a repository" rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-repo-forked" height="16" version="1.1" viewBox="0 0 10 16" width="10"><path d="M8 1a1.993 1.993 0 0 0-1 3.72V6L5 8 3 6V4.72A1.993 1.993 0 0 0 2 1a1.993 1.993 0 0 0-1 3.72V6.5l3 3v1.78A1.993 1.993 0 0 0 5 15a1.993 1.993 0 0 0 1-3.72V9.5l3-3V4.72A1.993 1.993 0 0 0 8 1zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3 10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zm3-10c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"></path></svg> + Fork + </a> + + <a href="/NabaviLab/CNV-Sim/network" class="social-count" + aria-label="0 users are forked this repository"> + 0 + </a> + </li> +</ul> + + <h1 class="public "> + <svg aria-hidden="true" class="octicon octicon-repo" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M4 9H3V8h1v1zm0-3H3v1h1V6zm0-2H3v1h1V4zm0-2H3v1h1V2zm8-1v12c0 .55-.45 1-1 1H6v2l-1.5-1.5L3 16v-2H1c-.55 0-1-.45-1-1V1c0-.55.45-1 1-1h10c.55 0 1 .45 1 1zm-1 10H1v2h2v-1h3v1h5v-2zm0-10H2v9h9V1z"></path></svg> + <span class="author" itemprop="author"><a href="/NabaviLab" class="url fn" rel="author">NabaviLab</a></span><!-- +--><span class="path-divider">/</span><!-- +--><strong itemprop="name"><a href="/NabaviLab/CNV-Sim" data-pjax="#js-repo-pjax-container">CNV-Sim</a></strong> + +</h1> + + </div> + <div class="container"> + +<nav class="reponav js-repo-nav js-sidenav-container-pjax" + itemscope + itemtype="http://schema.org/BreadcrumbList" + role="navigation" + data-pjax="#js-repo-pjax-container"> + + <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> + <a href="/NabaviLab/CNV-Sim" aria-selected="true" class="js-selected-navigation-item selected reponav-item" data-hotkey="g c" data-selected-links="repo_source repo_downloads repo_commits repo_releases repo_tags repo_branches /NabaviLab/CNV-Sim" itemprop="url"> + <svg aria-hidden="true" class="octicon octicon-code" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M9.5 3L8 4.5 11.5 8 8 11.5 9.5 13 14 8 9.5 3zm-5 0L0 8l4.5 5L6 11.5 2.5 8 6 4.5 4.5 3z"></path></svg> + <span itemprop="name">Code</span> + <meta itemprop="position" content="1"> +</a> </span> + + <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> + <a href="/NabaviLab/CNV-Sim/issues" class="js-selected-navigation-item reponav-item" data-hotkey="g i" data-selected-links="repo_issues repo_labels repo_milestones /NabaviLab/CNV-Sim/issues" itemprop="url"> + <svg aria-hidden="true" class="octicon octicon-issue-opened" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M7 2.3c3.14 0 5.7 2.56 5.7 5.7s-2.56 5.7-5.7 5.7A5.71 5.71 0 0 1 1.3 8c0-3.14 2.56-5.7 5.7-5.7zM7 1C3.14 1 0 4.14 0 8s3.14 7 7 7 7-3.14 7-7-3.14-7-7-7zm1 3H6v5h2V4zm0 6H6v2h2v-2z"></path></svg> + <span itemprop="name">Issues</span> + <span class="counter">1</span> + <meta itemprop="position" content="2"> +</a> </span> + + <span itemscope itemtype="http://schema.org/ListItem" itemprop="itemListElement"> + <a href="/NabaviLab/CNV-Sim/pulls" class="js-selected-navigation-item reponav-item" data-hotkey="g p" data-selected-links="repo_pulls /NabaviLab/CNV-Sim/pulls" itemprop="url"> + <svg aria-hidden="true" class="octicon octicon-git-pull-request" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M11 11.28V5c-.03-.78-.34-1.47-.94-2.06C9.46 2.35 8.78 2.03 8 2H7V0L4 3l3 3V4h1c.27.02.48.11.69.31.21.2.3.42.31.69v6.28A1.993 1.993 0 0 0 10 15a1.993 1.993 0 0 0 1-3.72zm-1 2.92c-.66 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2zM4 3c0-1.11-.89-2-2-2a1.993 1.993 0 0 0-1 3.72v6.56A1.993 1.993 0 0 0 2 15a1.993 1.993 0 0 0 1-3.72V4.72c.59-.34 1-.98 1-1.72zm-.8 10c0 .66-.55 1.2-1.2 1.2-.65 0-1.2-.55-1.2-1.2 0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2zM2 4.2C1.34 4.2.8 3.65.8 3c0-.65.55-1.2 1.2-1.2.65 0 1.2.55 1.2 1.2 0 .65-.55 1.2-1.2 1.2z"></path></svg> + <span itemprop="name">Pull requests</span> + <span class="counter">0</span> + <meta itemprop="position" content="3"> +</a> </span> + + + + + <a href="/NabaviLab/CNV-Sim/pulse" class="js-selected-navigation-item reponav-item" data-selected-links="pulse /NabaviLab/CNV-Sim/pulse"> + <svg aria-hidden="true" class="octicon octicon-pulse" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M11.5 8L8.8 5.4 6.6 8.5 5.5 1.6 2.38 8H0v2h3.6l.9-1.8.9 5.4L9 8.5l1.6 1.5H14V8z"></path></svg> + Pulse +</a> + <a href="/NabaviLab/CNV-Sim/graphs" class="js-selected-navigation-item reponav-item" data-selected-links="repo_graphs repo_contributors /NabaviLab/CNV-Sim/graphs"> + <svg aria-hidden="true" class="octicon octicon-graph" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path d="M16 14v1H0V0h1v14h15zM5 13H3V8h2v5zm4 0H7V3h2v10zm4 0h-2V6h2v7z"></path></svg> + Graphs +</a> + +</nav> + + </div> +</div> + +<div class="container new-discussion-timeline experiment-repo-nav"> + <div class="repository-content"> + + +<div class="file-navigation"> + +<div class="select-menu branch-select-menu js-menu-container js-select-menu float-left"> + <button class="btn btn-sm select-menu-button js-menu-target css-truncate" data-hotkey="w" + + type="button" aria-label="Switch branches or tags" tabindex="0" aria-haspopup="true"> + <i>Branch:</i> + <span class="js-select-button css-truncate-target">master</span> + </button> + + <div class="select-menu-modal-holder js-menu-content js-navigation-container" data-pjax aria-hidden="true"> + + <div class="select-menu-modal"> + <div class="select-menu-header"> + <svg aria-label="Close" class="octicon octicon-x js-menu-close" height="16" role="img" version="1.1" viewBox="0 0 12 16" width="12"><path d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48z"></path></svg> + <span class="select-menu-title">Switch branches/tags</span> + </div> + + <div class="select-menu-filters"> + <div class="select-menu-text-filter"> + <input type="text" aria-label="Filter branches/tags" id="context-commitish-filter-field" class="form-control js-filterable-field js-navigation-enable" placeholder="Filter branches/tags"> + </div> + <div class="select-menu-tabs"> + <ul> + <li class="select-menu-tab"> + <a href="#" data-tab-filter="branches" data-filter-placeholder="Filter branches/tags" class="js-select-menu-tab" role="tab">Branches</a> + </li> + <li class="select-menu-tab"> + <a href="#" data-tab-filter="tags" data-filter-placeholder="Find a tag…" class="js-select-menu-tab" role="tab">Tags</a> + </li> + </ul> + </div> + </div> + + <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="branches" role="menu"> + + <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring"> + + + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/dev/cnvsim" + data-name="dev" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target js-select-menu-filter-text"> + dev + </span> + </a> + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/galaxy/cnvsim" + data-name="galaxy" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target js-select-menu-filter-text"> + galaxy + </span> + </a> + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/gh-pages/cnvsim" + data-name="gh-pages" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target js-select-menu-filter-text"> + gh-pages + </span> + </a> + <a class="select-menu-item js-navigation-item js-navigation-open selected" + href="/NabaviLab/CNV-Sim/tree/master/cnvsim" + data-name="master" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target js-select-menu-filter-text"> + master + </span> + </a> + </div> + + <div class="select-menu-no-results">Nothing to show</div> + </div> + + <div class="select-menu-list select-menu-tab-bucket js-select-menu-tab-bucket" data-tab-filter="tags"> + <div data-filterable-for="context-commitish-filter-field" data-filterable-type="substring"> + + + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/v0.9.2/cnvsim" + data-name="v0.9.2" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target" title="v0.9.2"> + v0.9.2 + </span> + </a> + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/v0.9.1/cnvsim" + data-name="v0.9.1" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target" title="v0.9.1"> + v0.9.1 + </span> + </a> + <a class="select-menu-item js-navigation-item js-navigation-open " + href="/NabaviLab/CNV-Sim/tree/v0.9.0/cnvsim" + data-name="v0.9.0" + data-skip-pjax="true" + rel="nofollow"> + <svg aria-hidden="true" class="octicon octicon-check select-menu-item-icon" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M12 5l-8 8-4-4 1.5-1.5L4 10l6.5-6.5z"></path></svg> + <span class="select-menu-item-text css-truncate-target" title="v0.9.0"> + v0.9.0 + </span> + </a> + </div> + + <div class="select-menu-no-results">Nothing to show</div> + </div> + + </div> + </div> +</div> + + <div class="btn-group float-right"> + + <button class="btn btn-sm disabled tooltipped tooltipped-n" aria-label="You must be signed in to make or propose changes" type="button"> + Create new file + </button> + + + + <a href="/NabaviLab/CNV-Sim/find/master" data-pjax data-hotkey="t" class="js-pjax-capture-input btn btn-sm empty-icon"> + Find file + </a> + <a href="/NabaviLab/CNV-Sim/commits/master/cnvsim" class="btn btn-sm empty-icon tooltipped tooltipped-nw" aria-label="Browse commits for this branch"> + History + </a> + </div> + <div class="breadcrumb"><span class="repo-root js-repo-root"><span class="js-path-segment"><a href="/NabaviLab/CNV-Sim"><span>CNV-Sim</span></a></span></span><span class="separator">/</span><strong class="final-path">cnvsim</strong><span class="separator">/</span></div> +</div> + + + + + <div class="commit-tease js-details-container"> + <span class="float-right"> + Latest commit + <a class="commit-tease-sha" href="/NabaviLab/CNV-Sim/commit/249675fac86a93cbbaf6a67b360a078cb3e067b8" data-pjax> + 249675f + </a> + <span itemprop="dateModified"><relative-time datetime="2016-09-05T22:37:24Z">Sep 5, 2016</relative-time></span> + </span> + + + <span class="commit-author-section"> + <img alt="@abdelrahmanhosny" class="avatar" height="20" src="https://avatars2.githubusercontent.com/u/9287641?v=3&s=40" width="20" /> + <a href="/abdelrahmanhosny" class="user-mention" rel="contributor">abdelrahmanhosny</a> + </span> + + <a href="/NabaviLab/CNV-Sim/commit/249675fac86a93cbbaf6a67b360a078cb3e067b8" class="message" data-pjax="true" title="first implementation for CNV region length">first implementation for CNV region length</a> + </span> + + </div> + + +<div class="file-wrap"> + + <a href="/NabaviLab/CNV-Sim/tree/ae6669bb888ad1e8a20ec57ff1b933be02ee6ba8/cnvsim" class="d-none js-permalink-shortcut" data-hotkey="y">Permalink</a> + + <table class="files js-navigation-container js-active-navigation-container" data-pjax> + <tr class="up-tree js-navigation-item"> + <td></td> + <td><a href="/NabaviLab/CNV-Sim" class="js-navigation-open" rel="nofollow" title="Go to parent directory">..</a></td> + <td></td> + <td></td> + </tr> + + + <tbody> + <tr class="warning include-fragment-error"> + <td class="icon"><svg aria-hidden="true" class="octicon octicon-alert" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path d="M8.865 1.52c-.18-.31-.51-.5-.87-.5s-.69.19-.87.5L.275 13.5c-.18.31-.18.69 0 1 .19.31.52.5.87.5h13.7c.36 0 .69-.19.86-.5.17-.31.18-.69.01-1L8.865 1.52zM8.995 13h-2v-2h2v2zm0-3h-2V6h2v4z"></path></svg></td> + <td class="content" colspan="3">Failed to load latest commit information.</td> + </tr> + + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-directory" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M13 4H7V3c0-.66-.31-1-1-1H1c-.55 0-1 .45-1 1v10c0 .55.45 1 1 1h12c.55 0 1-.45 1-1V5c0-.55-.45-1-1-1zM6 4H1V3h5v1z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/tree/master/cnvsim/ART" class="js-navigation-open" id="cf9cae9dd280e888c22ab61f3fa946dd-58efcd1655d3b4568a124912eee00bcc21907b4a" title="ART">ART</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/2090035d0c2cd1cb7da26b77abd4f86e3524e75f" class="message" data-pjax="true" title="removed hardcoded constants and refactored the library">removed hardcoded constants and refactored the library</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-08-01T00:20:44Z">Aug 1, 2016</time-ago></span> + </td> + </tr> + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-directory" height="16" version="1.1" viewBox="0 0 14 16" width="14"><path d="M13 4H7V3c0-.66-.31-1-1-1H1c-.55 0-1 .45-1 1v10c0 .55.45 1 1 1h12c.55 0 1-.45 1-1V5c0-.55-.45-1-1-1zM6 4H1V3h5v1z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/tree/master/cnvsim/Wessim" class="js-navigation-open" id="3fa39bc9c4de4d69843acf0a247e75a9-69bb371a61b3a75de719069c431fd310c1afcdb7" title="Wessim">Wessim</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/2090035d0c2cd1cb7da26b77abd4f86e3524e75f" class="message" data-pjax="true" title="removed hardcoded constants and refactored the library">removed hardcoded constants and refactored the library</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-08-01T00:20:44Z">Aug 1, 2016</time-ago></span> + </td> + </tr> + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-text" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M6 5H2V4h4v1zM2 8h7V7H2v1zm0 2h7V9H2v1zm0 2h7v-1H2v1zm10-7.5V14c0 .55-.45 1-1 1H1c-.55 0-1-.45-1-1V2c0-.55.45-1 1-1h7.5L12 4.5zM11 5L8 2H1v12h10V5z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/blob/master/cnvsim/__init__.py" class="js-navigation-open" id="743b1adbf37db12e16e01ef62a6f7d72-e69de29bb2d1d6434b8b29ae775ad8c2e48c5391" title="__init__.py">__init__.py</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/2090035d0c2cd1cb7da26b77abd4f86e3524e75f" class="message" data-pjax="true" title="removed hardcoded constants and refactored the library">removed hardcoded constants and refactored the library</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-08-01T00:20:44Z">Aug 1, 2016</time-ago></span> + </td> + </tr> + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-text" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M6 5H2V4h4v1zM2 8h7V7H2v1zm0 2h7V9H2v1zm0 2h7v-1H2v1zm10-7.5V14c0 .55-.45 1-1 1H1c-.55 0-1-.45-1-1V2c0-.55.45-1 1-1h7.5L12 4.5zM11 5L8 2H1v12h10V5z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/blob/master/cnvsim/exome_simulator.py" class="js-navigation-open" id="247848957b9ec3e6b68b0af8414b8034-b481aa6b34ce28b8e142985fbf6d98b01ef79ecf" title="exome_simulator.py">exome_simulator.py</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/249675fac86a93cbbaf6a67b360a078cb3e067b8" class="message" data-pjax="true" title="first implementation for CNV region length">first implementation for CNV region length</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-09-05T22:37:24Z">Sep 5, 2016</time-ago></span> + </td> + </tr> + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-text" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M6 5H2V4h4v1zM2 8h7V7H2v1zm0 2h7V9H2v1zm0 2h7v-1H2v1zm10-7.5V14c0 .55-.45 1-1 1H1c-.55 0-1-.45-1-1V2c0-.55.45-1 1-1h7.5L12 4.5zM11 5L8 2H1v12h10V5z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/blob/master/cnvsim/fileio.py" class="js-navigation-open" id="878c45c78e8367b7e99ed3505e0d0c31-dd9bef9718690b4b4d5b0848ac5e97b2ffedf999" title="fileio.py">fileio.py</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/9c65f00467a2dfa9035570af35ca18fd5d1d2d53" class="message" data-pjax="true" title="Paired-end reads for ART and polishing for Galaxy">Paired-end reads for ART and polishing for Galaxy</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-08-06T18:53:27Z">Aug 6, 2016</time-ago></span> + </td> + </tr> + <tr class="js-navigation-item"> + <td class="icon"> + <svg aria-hidden="true" class="octicon octicon-file-text" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M6 5H2V4h4v1zM2 8h7V7H2v1zm0 2h7V9H2v1zm0 2h7v-1H2v1zm10-7.5V14c0 .55-.45 1-1 1H1c-.55 0-1-.45-1-1V2c0-.55.45-1 1-1h7.5L12 4.5zM11 5L8 2H1v12h10V5z"></path></svg> + <img alt="" class="spinner" height="16" src="https://assets-cdn.github.com/images/spinners/octocat-spinner-32.gif" width="16" /> + </td> + <td class="content"> + <span class="css-truncate css-truncate-target"><a href="/NabaviLab/CNV-Sim/blob/master/cnvsim/genome_simulator.py" class="js-navigation-open" id="3ec4d0527e5fc491772dc52e6da6a01c-97739af454a0022594da55f6b6c838136d8c8a53" title="genome_simulator.py">genome_simulator.py</a></span> + </td> + <td class="message"> + <span class="css-truncate css-truncate-target"> + <a href="/NabaviLab/CNV-Sim/commit/249675fac86a93cbbaf6a67b360a078cb3e067b8" class="message" data-pjax="true" title="first implementation for CNV region length">first implementation for CNV region length</a> + </span> + </td> + <td class="age"> + <span class="css-truncate css-truncate-target"><time-ago datetime="2016-09-05T22:37:24Z">Sep 5, 2016</time-ago></span> + </td> + </tr> + </tbody> + </table> + +</div> + + + + + + + </div> + <div class="modal-backdrop js-touch-events"></div> +</div> + + + </div> + </div> + + </div> + + <div class="container site-footer-container"> + <div class="site-footer" role="contentinfo"> + <ul class="site-footer-links float-right"> + <li><a href="https://github.com/contact" data-ga-click="Footer, go to contact, text:contact">Contact GitHub</a></li> + <li><a href="https://developer.github.com" data-ga-click="Footer, go to api, text:api">API</a></li> + <li><a href="https://training.github.com" data-ga-click="Footer, go to training, text:training">Training</a></li> + <li><a href="https://shop.github.com" data-ga-click="Footer, go to shop, text:shop">Shop</a></li> + <li><a href="https://github.com/blog" data-ga-click="Footer, go to blog, text:blog">Blog</a></li> + <li><a href="https://github.com/about" data-ga-click="Footer, go to about, text:about">About</a></li> + + </ul> + + <a href="https://github.com" aria-label="Homepage" class="site-footer-mark" title="GitHub"> + <svg aria-hidden="true" class="octicon octicon-mark-github" height="24" version="1.1" viewBox="0 0 16 16" width="24"><path d="M8 0C3.58 0 0 3.58 0 8c0 3.54 2.29 6.53 5.47 7.59.4.07.55-.17.55-.38 0-.19-.01-.82-.01-1.49-2.01.37-2.53-.49-2.69-.94-.09-.23-.48-.94-.82-1.13-.28-.15-.68-.52-.01-.53.63-.01 1.08.58 1.23.82.72 1.21 1.87.87 2.33.66.07-.52.28-.87.51-1.07-1.78-.2-3.64-.89-3.64-3.95 0-.87.31-1.59.82-2.15-.08-.2-.36-1.02.08-2.12 0 0 .67-.21 2.2.82.64-.18 1.32-.27 2-.27.68 0 1.36.09 2 .27 1.53-1.04 2.2-.82 2.2-.82.44 1.1.16 1.92.08 2.12.51.56.82 1.27.82 2.15 0 3.07-1.87 3.75-3.65 3.95.29.25.54.73.54 1.48 0 1.07-.01 1.93-.01 2.2 0 .21.15.46.55.38A8.013 8.013 0 0 0 16 8c0-4.42-3.58-8-8-8z"></path></svg> +</a> + <ul class="site-footer-links"> + <li>© 2016 <span title="0.06198s from github-fe144-cp1-prd.iad.github.net">GitHub</span>, Inc.</li> + <li><a href="https://github.com/site/terms" data-ga-click="Footer, go to terms, text:terms">Terms</a></li> + <li><a href="https://github.com/site/privacy" data-ga-click="Footer, go to privacy, text:privacy">Privacy</a></li> + <li><a href="https://github.com/security" data-ga-click="Footer, go to security, text:security">Security</a></li> + <li><a href="https://status.github.com/" data-ga-click="Footer, go to status, text:status">Status</a></li> + <li><a href="https://help.github.com" data-ga-click="Footer, go to help, text:help">Help</a></li> + </ul> + </div> +</div> + + + + + + <div id="ajax-error-message" class="ajax-error-message flash flash-error"> + <svg aria-hidden="true" class="octicon octicon-alert" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path d="M8.865 1.52c-.18-.31-.51-.5-.87-.5s-.69.19-.87.5L.275 13.5c-.18.31-.18.69 0 1 .19.31.52.5.87.5h13.7c.36 0 .69-.19.86-.5.17-.31.18-.69.01-1L8.865 1.52zM8.995 13h-2v-2h2v2zm0-3h-2V6h2v4z"></path></svg> + <button type="button" class="flash-close js-flash-close js-ajax-error-dismiss" aria-label="Dismiss error"> + <svg aria-hidden="true" class="octicon octicon-x" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48z"></path></svg> + </button> + You can't perform that action at this time. + </div> + + + <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/compat-40e365359d1c4db1e36a55be458e60f2b7c24d58b5a00ae13398480e7ba768e0.js"></script> + <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-88471af1fec40ff9418efbe2ddd15b6896af8d772f8179004c254dffc25ea490.js"></script> + <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github-baba95ef24d5d4fa04972b557ea4bc851965a8c18ef377a55f9cc1bbfc651d92.js"></script> + + + + + + + <div class="js-stale-session-flash stale-session-flash flash flash-warn flash-banner d-none"> + <svg aria-hidden="true" class="octicon octicon-alert" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path d="M8.865 1.52c-.18-.31-.51-.5-.87-.5s-.69.19-.87.5L.275 13.5c-.18.31-.18.69 0 1 .19.31.52.5.87.5h13.7c.36 0 .69-.19.86-.5.17-.31.18-.69.01-1L8.865 1.52zM8.995 13h-2v-2h2v2zm0-3h-2V6h2v4z"></path></svg> + <span class="signed-in-tab-flash">You signed in with another tab or window. <a href="">Reload</a> to refresh your session.</span> + <span class="signed-out-tab-flash">You signed out in another tab or window. <a href="">Reload</a> to refresh your session.</span> + </div> + <div class="facebox" id="facebox" style="display:none;"> + <div class="facebox-popup"> + <div class="facebox-content" role="dialog" aria-labelledby="facebox-header" aria-describedby="facebox-description"> + </div> + <button type="button" class="facebox-close js-facebox-close" aria-label="Close modal"> + <svg aria-hidden="true" class="octicon octicon-x" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48z"></path></svg> + </button> + </div> +</div> + + </body> +</html> +