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1 <tool id="motif_searcher" name="Motif search" version="1.0.0">
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2 <description>tool to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description>
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3 <command interpreter="perl">motif_search_galaxy.pl $input $output $motif1 $motif2 $motif3 $motif4 $motif5</command>
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4 <inputs>
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5 <param format="gff" name="input" type="data" label="FIMO file"/>
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6 <param name="motif1" size="8" type="text" value="#" label="Motif 1"/>
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7 <param name="motif2" size="8" type="text" value="#" label="Motif 2"/>
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8 <param name="motif3" size="8" type="text" value="#" label="Motif 3"/>
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9 <param name="motif4" size="8" type="text" value="#" label="Motif 4"/>
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10 <param name="motif5" size="8" type="text" value="#" label="Motif 5"/>
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11 </inputs>
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12 <outputs>
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13 <data format="gff" name="output" label="motif_search_output" />
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14 </outputs>
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15 </tool>
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