Mercurial > repos > amadeo > amadeo
comparison Tools/Motif_search/motif_search_galaxy.xml @ 3:b30ba2b06326 draft
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| author | amadeo |
|---|---|
| date | Mon, 05 Sep 2016 06:01:48 -0400 |
| parents | 229d36377838 |
| children |
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| 2:607d7bdfb07f | 3:b30ba2b06326 |
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| 1 <tool id="motif_searcher" name="Motif search" version="1.0.0"> | |
| 2 <description>tool to compare contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description> | |
| 3 <command interpreter="perl">motif_search_galaxy.pl $input $output $motif1 $motif2 $motif3 $motif4 $motif5</command> | |
| 4 <inputs> | |
| 5 <param format="gff" name="input" type="data" label="FIMO file"/> | |
| 6 <param name="motif1" size="8" type="text" value="#" label="Motif 1"/> | |
| 7 <param name="motif2" size="8" type="text" value="#" label="Motif 2"/> | |
| 8 <param name="motif3" size="8" type="text" value="#" label="Motif 3"/> | |
| 9 <param name="motif4" size="8" type="text" value="#" label="Motif 4"/> | |
| 10 <param name="motif5" size="8" type="text" value="#" label="Motif 5"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="gff" name="output" label="motif_search_output" /> | |
| 14 </outputs> | |
| 15 </tool> |