Mercurial > repos > amadeo > amadeo
comparison tool_conf.xml.sample @ 1:ed814636753a draft
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author | amadeo |
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date | Mon, 05 Sep 2016 05:54:23 -0400 |
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0:229d36377838 | 1:ed814636753a |
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1 <?xml version="1.0" encoding="utf-8"?> | |
2 <toolbox monitor="true">d | |
3 <section id="CREF" name="CREF"> | |
4 <tool file="CREF/short-headers.xml"/> | |
5 <tool file="CREF/extract_motifs_codes.xml"/> | |
6 <tool file="CREF/list_motifs.xml"/> | |
7 <tool file="CREF/extract_motifs_subset.xml"/> | |
8 </section> | |
9 <section id="First_version" name="Remove same overlapped motifs v.1.0"> | |
10 <tool file="First_version/sorting_first.xml"/> | |
11 <tool file="First_version/remove_motifs_overlaped.xml"/> | |
12 </section> | |
13 <section id="Second" name="Remove same and differents overlapped motifs v.2.0"> | |
14 <tool file="Second/remove_motifs_v2.xml"/> | |
15 <tool file="Second/step1.xml"/> | |
16 <tool file="Second/step2.xml"/> | |
17 </section> | |
18 <section id="Matrix" name="Gene-motif matrix"> | |
19 <tool file="Matrix/matrix_generator.xml"/> | |
20 </section> | |
21 <section id="Motif_search" name="CREF results analysis"> | |
22 <tool file="Motif_search/motif_search_galaxy.xml"/> | |
23 <tool file="Motif_search/sort_genes_galaxy.xml"/> | |
24 <tool file="Motif_search/sort_positions_galaxy.xml"/> | |
25 <tool file="Motif_search/rules.xml"/> | |
26 <tool file="Motif_search/testrules_galaxy.xml"/> | |
27 </section> | |
28 </toolbox> |