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1 <?xml version="1.0" encoding="utf-8"?>
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2 <toolbox monitor="true">d
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3 <section id="CREF" name="CREF">
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4 <tool file="CREF/short-headers.xml"/>
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5 <tool file="CREF/extract_motifs_codes.xml"/>
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6 <tool file="CREF/list_motifs.xml"/>
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7 <tool file="CREF/extract_motifs_subset.xml"/>
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8 </section>
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9 <section id="First_version" name="Remove same overlapped motifs v.1.0">
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10 <tool file="First_version/sorting_first.xml"/>
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11 <tool file="First_version/remove_motifs_overlaped.xml"/>
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12 </section>
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13 <section id="Second" name="Remove same and differents overlapped motifs v.2.0">
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14 <tool file="Second/remove_motifs_v2.xml"/>
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15 <tool file="Second/step1.xml"/>
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16 <tool file="Second/step2.xml"/>
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17 </section>
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18 <section id="Matrix" name="Gene-motif matrix">
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19 <tool file="Matrix/matrix_generator.xml"/>
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20 </section>
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21 <section id="Motif_search" name="CREF results analysis">
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22 <tool file="Motif_search/motif_search_galaxy.xml"/>
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23 <tool file="Motif_search/sort_genes_galaxy.xml"/>
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24 <tool file="Motif_search/sort_positions_galaxy.xml"/>
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25 <tool file="Motif_search/rules.xml"/>
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26 <tool file="Motif_search/testrules_galaxy.xml"/>
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27 </section>
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28 </toolbox> |
