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diff Tools/First_version/remove_motifs_overlaped.xml @ 0:229d36377838 draft

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author amadeo
date Mon, 05 Sep 2016 05:53:08 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Tools/First_version/remove_motifs_overlaped.xml	Mon Sep 05 05:53:08 2016 -0400
@@ -0,0 +1,12 @@
+<tool id="remove_same_motifs" name="Remove same motifs overlaped" version="1.0.0">
+	<description>Script to compare same contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description>
+	<command interpreter="perl">rm_overlap_motifs_galaxy.pl $input $output $secondoutput $value </command>
+	<inputs>
+		<param format="gff" name="input" type="data" label="FIMO file"/>
+		<param name="value" size="3" type="integer" value="20" label="Overlap value"/>
+	</inputs>
+	<outputs>
+		<data format="gff" name="output" label="positive_strand" />
+		<data format="gff" name="secondoutput" label="negative_strand" />
+	</outputs>
+</tool>