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author amadeo
date Mon, 05 Sep 2016 05:53:08 -0400
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<tool id="remove_same_motifs" name="Remove same motifs overlaped" version="1.0.0">
	<description>Script to compare same contigous motifs in gff file and, in case that two overlap, remove the motif with the highest p value</description>
	<command interpreter="perl">rm_overlap_motifs_galaxy.pl $input $output $secondoutput $value </command>
	<inputs>
		<param format="gff" name="input" type="data" label="FIMO file"/>
		<param name="value" size="3" type="integer" value="20" label="Overlap value"/>
	</inputs>
	<outputs>
		<data format="gff" name="output" label="positive_strand" />
		<data format="gff" name="secondoutput" label="negative_strand" />
	</outputs>
</tool>