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author | anmoljh |
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date | Fri, 01 Jun 2018 04:54:06 -0400 |
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<?xml version="1.0"?> <tool id="extract_compound_id" name="Compound-ID Extractor" version="1.0"> <description>This tool extracts compound name/id from prediction result</description> <stdio> <exit_code range="1:" /> </stdio> <command><![CDATA[ awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' | paste -sd "," - > $extracted_IDs ; ]]></command> <inputs> <param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" /> </inputs> <outputs> <data name="extracted_IDs" format="txt" label="Ids-${predictionfile.name}" /> </outputs> <tests> <test> <param name="predictionfile" value="selected_compounds.txt" /> <output name="extracted_IDs" file="extracted_ids.txt" compare="sim_size" delta="2000" /> </test> </tests> <help></help> </tool>