Mercurial > repos > anmoljh > csv_to_rdata
comparison csv2rdata.xml @ 0:49d7eb9e1092 draft default tip
planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
| author | anmoljh |
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| date | Thu, 31 May 2018 11:40:01 -0400 |
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| -1:000000000000 | 0:49d7eb9e1092 |
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| 1 <tool id="csv2rdata" name="Prepare input file" version="1.0"> | |
| 2 <description> | |
| 3 Converts input csv file into RData format | |
| 4 </description> | |
| 5 | |
| 6 <requirements> | |
| 7 <requirement type="package" version="3.2.1">R</requirement> | |
| 8 </requirements> | |
| 9 | |
| 10 <stdio> | |
| 11 <exit_code range="1:" /> | |
| 12 </stdio> | |
| 13 | |
| 14 <command interpreter="Rscript">csv2rdata.R $file1 $RData </command> | |
| 15 | |
| 16 <inputs> | |
| 17 <param name="file1" type="data" format="csv" label="Select file containing training data" help="CSV format" /> | |
| 18 </inputs> | |
| 19 | |
| 20 <outputs> | |
| 21 <data name="RData" format="rdata" label="Input.rdata" /> | |
| 22 </outputs> | |
| 23 | |
| 24 <tests> | |
| 25 <test> | |
| 26 <param name="file1" value="non_redundant.csv" /> | |
| 27 <output name="RData" file="desc.rdata" compare="sim_size" delta="50000" /> | |
| 28 </test> | |
| 29 </tests> | |
| 30 | |
| 31 <help> | |
| 32 .. class:: infomark | |
| 33 | |
| 34 **Input "csv file" format must be as given below :** | |
| 35 | |
| 36 | |
| 37 "",feature1,feaure2,feature3,..,activity | |
| 38 | |
| 39 | |
| 40 cpd1,623,0.4,3.4,..,Active | |
| 41 | |
| 42 cpd2,234,0.9,5.6,..,Inactive | |
| 43 | |
| 44 cpd3,567,0.5,3.14,..,Active | |
| 45 | |
| 46 cpd4,231,0.1,1.2,..,Inactive | |
| 47 | |
| 48 here "cpd" stands for name or id of a compound. It is rowname with no column header. | |
| 49 </help> | |
| 50 | |
| 51 </tool> |