<tool id="csv2rdata" name="Prepare input file" version="1.0">
    <description>
         Converts input csv file into RData format
    </description>

    <requirements>
        <requirement type="package" version="3.2.1">R</requirement>
    </requirements>

    <stdio>
        <exit_code range="1:" />
    </stdio>

    <command interpreter="Rscript">csv2rdata.R $file1 $RData </command>

    <inputs>
	    <param name="file1" type="data" format="csv"  label="Select file containing training data" help="CSV format" />
    </inputs>

    <outputs>
	    <data name="RData" format="rdata" label="Input.rdata" />
    </outputs>

    <tests>
	<test>
           <param  name="file1" value="non_redundant.csv" />
           <output name="RData" file="desc.rdata" compare="sim_size" delta="50000" />
        </test>
    </tests>

    <help>
.. class:: infomark

**Input "csv file" format must be as given below :**


"",feature1,feaure2,feature3,..,activity


cpd1,623,0.4,3.4,..,Active
                      
cpd2,234,0.9,5.6,..,Inactive 

cpd3,567,0.5,3.14,..,Active

cpd4,231,0.1,1.2,..,Inactive 

here "cpd" stands for name or id of a compound. It is rowname with no column header.     
    </help>

</tool>