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planemo upload commit a1f4dd8eb560c649391ada1a6bb9505893a35272
author anmoljh
date Thu, 31 May 2018 11:04:46 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 1088 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 31 11:04:46 2018 -0400
@@ -0,0 +1,1088 @@
+<?xml version="1.0"?>
+<tool_dependency>
+   <package name="R" version="3.2.1">
+	   <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+   </package>
+
+   <package name="carettools" version="1.0">
+     <install version="1.0">
+      <actions>
+        <action type="set_environment_for_install">
+		<repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" >
+                        <package name="R" version="3.2.1" />
+        	</repository>
+        </action>
+               
+	<action type="download_file" sha256sum="559c0d61c4e58f605c2871320f8fe9a4fa19d4fd85b67c235d7a452b6720214b">
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+	</action>
+	<action type="shell_command">R CMD INSTALL Rcpp_0.12.1.tar.gz</action>
+	<action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3gf $R_ROOT_DIR/lib/libblas.so.3</action>
+	<action type="shell_command">cp $R_ROOT_DIR/lib/libblas.so.3 $R_ROOT_DIR/lib/R/lib</action>
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+	<action type="shell_command">R CMD INSTALL Matrix_1.2-2.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL survey_3.30-3.tar.gz</action>
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+	<action type="shell_command">R CMD INSTALL tables_0.7.79.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL testit_0.4.tar.gz</action>
+	<action type="download_file" sha256sum="6262ef7ca9f5eeb9db8229d6bb7a51d46d467a4fa73e2ccc5b4b78e18780c432">
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+	</action>
+	<action type="shell_command">R CMD INSTALL timeDate_3012.100.tar.gz</action>
+	<action type="download_file" sha256sum="fcff870eedce271d30955c324c6f1dc1d08881cb4913eeb83089608cbbb21b2f">
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+	</action>
+	<action type="shell_command">R CMD INSTALL tis_1.30.tar.gz</action>
+	<action type="download_file" sha256sum="227815323ca5019d54cc0fa24c41066be68a61eb2e29026eb4d3bb9f55f876b6">
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+	</action>
+	<action type="shell_command">R CMD INSTALL tripack_1.3-6.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL truncreg_0.2-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL tseries_0.10-34.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL TSA_1.01.tar.gz</action-->
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+	</action>
+	<action type="shell_command">R CMD INSTALL urca_1.2-8.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL vcd_1.4-1.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL VGAM_0.9-8.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL VGAMdata_0.9-7.tar.gz</action>
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+	</action>
+	<action type="shell_command">R CMD INSTALL Zelig_4.2-1.tar.gz</action>
+	<!--action type="download_file" sha256sum="6c7aa6c030109f18caa9d79d7aa35dadec588b9256b801bd41be7b59081b3f45">
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+	</action>
+	<action type="shell_command">R CMD INSTALL Rmpi_0.6-5.tar.gz</action-->
+	<action type="download_file" sha256sum="d32a73febf00930355cc00f3e4e71357412e0f163faae6a4bf7f552cacfe9af4">
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+	</action>
+	<action type="shell_command">R CMD INSTALL caTools_1.17.1.tar.gz</action>
+	<action type="download_file" sha256sum="c2123d4362b8924afddf1df34f80c43af9e6fb7af7783c84d8e2055cadbd50b7">
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+	</action>
+	<action type="shell_command">R CMD INSTALL pbapply_1.1-1.tar.gz</action>
+	<action type="download_file" sha256sum="fe47871bfd0f97b12a7fbb0eed75bb3c6f169bfbca72a4b301f19101ba5f119b">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/DataMiningWORK/GIT_GCAC_CODES/GIT/uplod/caretEnsemble_1.0.0.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL caretEnsemble_1.0.0.tar.gz</action>
+	<action type="download_file" sha256sum="4834e18805b4b1e720d51c8cc04f471b054bd769dbf16ef7283f33952b11e2be">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/RRF_1.6.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL RRF_1.6.tar.gz</action>                   
+	<action type="download_file" sha256sum="0e5d77abae12bc50639d34354f96a8e079408c9d7138a360743b73bd7bce6c1f">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/nnls_1.4.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL nnls_1.4.tar.gz</action>
+	<action type="download_file" sha256sum="d6a3ba333c21af859cf6176da660b74daf74f225d0fd7911bd49ba7fde3661e7">
+		https://raw.githubusercontent.com/Deep2106/R-3.1.3caret/CARET/mboost_2.4-0.tar.gz
+	</action>
+	<action type="shell_command">R CMD INSTALL mboost_2.4-0.tar.gz</action>
+
+      </actions>
+     </install>
+
+     <readme>caret tools installed successfully.</readme>
+
+   </package>
+</tool_dependency>