Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

annotate tool_dependencies.xml @ 4:3988016e1238

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
changed ncurses dependency
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 12:21:18 +0100
parents e071f6a8146c
children 03100f652146
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
1 <?xml version="1.0"?>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
2 <tool_dependency>
1
c48dd15d60a4 added dependencies for package_trinityrnaseq_r20140717
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
3 <package name="ncurses" version="5.9">
4
3988016e1238 changed ncurses dependency
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 3
diff changeset
4 <repository changeset_revision="62f9f5ddf0bf" name="package_ncurses_5_9" owner="anmoljh" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
1
c48dd15d60a4 added dependencies for package_trinityrnaseq_r20140717
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
5 </package>
c48dd15d60a4 added dependencies for package_trinityrnaseq_r20140717
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
6 <package name="zlib" version="1.2.8">
c48dd15d60a4 added dependencies for package_trinityrnaseq_r20140717
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
7 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
c48dd15d60a4 added dependencies for package_trinityrnaseq_r20140717
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 0
diff changeset
8 </package>
0
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
9 <package name="trinityrnaseq" version="r20140717">
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
10 <install version="1.0">
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
11 <actions>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
12 <action type="download_by_url">http://sourceforge.net/projects/trinityrnaseq/files/trinityrnaseq_r20140717.tar.gz</action>
2
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
13 <action type="set_environment_for_install">
4
3988016e1238 changed ncurses dependency
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 3
diff changeset
14 <repository changeset_revision="62f9f5ddf0bf" name="package_ncurses_5_9" owner="anmoljh" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
2
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
15 <package name="ncurses" version="5.9" />
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
16 </repository>
3
e071f6a8146c added prior_installation_required='True'
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 2
diff changeset
17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
2
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
18 <package name="zlib" version="1.2.8" />
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
19 </repository>
5a4325a558ee included set_environment_for_install for complile time env
'Anmol J. Hemrom' <anmol.jh@gmail.com>
parents: 1
diff changeset
20 </action>
0
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
21 <action type="shell_command">make</action>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
22 <action type="move_directory_files">
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
23 <source_directory>.</source_directory>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
24 <destination_directory>$INSTALL_DIR</destination_directory>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
25 </action>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
26 <action type="set_environment">
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
28 </action>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
29 <action type="set_environment">
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
30 <environment_variable name="TRINITY_HOME" action="set_to">$INSTALL_DIR</environment_variable>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
31 </action>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
32 </actions>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
33 </install>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
34 <readme>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
35 </readme>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
36 </package>
b96cec296f1d Uploaded
anmoljh
parents:
diff changeset
37 </tool_dependency>