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annotate tool_dependencies.xml @ 1:c48dd15d60a4

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added dependencies for package_trinityrnaseq_r20140717
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 09:51:19 +0100
parents b96cec296f1d
children 5a4325a558ee
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ncurses" version="5.9">
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4 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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'Anmol J. Hemrom' <anmol.jh@gmail.com>
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5 </package>
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6 <package name="zlib" version="1.2.8">
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7 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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'Anmol J. Hemrom' <anmol.jh@gmail.com>
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8 </package>
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9 <package name="trinityrnaseq" version="r20140717">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">http://sourceforge.net/projects/trinityrnaseq/files/trinityrnaseq_r20140717.tar.gz</action>
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13 <action type="shell_command">make</action>
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14 <action type="move_directory_files">
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15 <source_directory>.</source_directory>
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16 <destination_directory>$INSTALL_DIR</destination_directory>
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17 </action>
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18 <action type="set_environment">
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19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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20 </action>
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21 <action type="set_environment">
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22 <environment_variable name="TRINITY_HOME" action="set_to">$INSTALL_DIR</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 <readme>
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27 </readme>
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28 </package>
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29 </tool_dependency>