Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

comparison tool_dependencies.xml @ 8:22e5aa74fc50

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fixing -lcurses/-lncurses errors
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 15:41:56 +0100
parents 484a0e253167
children e1a35a46c53d
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7:484a0e253167 8:22e5aa74fc50
16 </repository> 16 </repository>
17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="zlib" version="1.2.8" /> 18 <package name="zlib" version="1.2.8" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 <action type="shell_command">sed -i.bak -e 's/TARGETS=jellyfish rsem transdecoder others/TARGETS=jellyfish transdecoder others/' trinity-plugins/Makefile</action> 21 <action type="shell_command">sed -i.bak -e '/tar -zxvf ${RSEM_CODE}.tar.gz/a \\tsed -e "s/-lcurses/-lncurses/" ./tmp.rsem/sam/Makefile' trinity-plugins/Makefile</action>
22 <action type="shell_command">make</action> 22 <action type="shell_command">make</action>
23 <action type="move_directory_files"> 23 <action type="move_directory_files">
24 <source_directory>.</source_directory> 24 <source_directory>.</source_directory>
25 <destination_directory>$INSTALL_DIR</destination_directory> 25 <destination_directory>$INSTALL_DIR</destination_directory>
26 </action> 26 </action>