Mercurial > repos > anmoljh > package_trinityrnaseq_r20140717

diff tool_dependencies.xml @ 8:22e5aa74fc50

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fixing -lcurses/-lncurses errors
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Thu, 03 Sep 2015 15:41:56 +0100
parents 484a0e253167
children e1a35a46c53d
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Sep 03 14:30:45 2015 +0100
+++ b/tool_dependencies.xml	Thu Sep 03 15:41:56 2015 +0100
@@ -18,7 +18,7 @@
                         <package name="zlib" version="1.2.8" />
                     </repository>
                 </action>
-                <action type="shell_command">sed -i.bak -e 's/TARGETS=jellyfish rsem transdecoder others/TARGETS=jellyfish transdecoder others/' trinity-plugins/Makefile</action>
+                <action type="shell_command">sed -i.bak -e '/tar -zxvf ${RSEM_CODE}.tar.gz/a \\tsed -e "s/-lcurses/-lncurses/" ./tmp.rsem/sam/Makefile' trinity-plugins/Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>