Mercurial > repos > anmoljh > trinitystats

changeset 2:6b715301b126

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corrected missing path
author 'Anmol J. Hemrom' <anmol.jh@gmail.com>
date Wed, 26 Aug 2015 13:52:39 +0100
parents d6df915e5f26
children 0a8d55375004
files trinityStats.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/trinityStats.xml	Thu Jul 09 11:22:44 2015 -0400
+++ b/trinityStats.xml	Wed Aug 26 13:52:39 2015 +0100
@@ -5,12 +5,12 @@
         <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
     </requirements>
 
-    <command interpreter='perl'>TrinityStats.pl  $fastafile  &gt; $statsfile 2&gt;&amp;1;</command>
+    <command interpreter='perl'>\$TRINITY_HOME/util/TrinityStats.pl  $fastafile  &gt; $statsfile 2&gt;&amp;1;</command>
 
     <inputs>
 	    <!-- Required -->
 
-	    <param name='fastafile'  type="data" format="fasta"  label='fastafile' help='Assembled fasta file'/>
+	    <param name='fastafile'  type="data" format="fasta" label='Trinity Assembly' help='Trinity Assembled fasta file'/>
   
 	     <!-- Optional -->