Mercurial > repos > anton > vcfaddinfo
diff vcfaddinfo.xml @ 0:70eb7c0b6598
Imported from capsule None
author | anton |
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date | Wed, 11 Jun 2014 17:10:42 -0400 |
parents | |
children | 43b9838461a5 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/vcfaddinfo.xml Wed Jun 11 17:10:42 2014 -0400 @@ -0,0 +1,31 @@ +<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.1"> +<requirements> + <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> +</requirements> + <description>Adds info fields from the second dataset which are not present in the first dataset</description> + <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/> + <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/> + </inputs> + <outputs> + <data format="vcf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="vcfaddinfo-input1.vcf"/> + <param name="input2" value="vcflib.vcf"/> + <output name="out_file1" file="vcfaddinfo-test1.vcf" /> + </test> + </tests> +<help> + +Adds info fields from the second dataset which are not present in the first dataset. + +----- + +Vcfaddinfo is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). + + +</help> +</tool>