Mercurial > repos > anton > vcfcommonsamples
comparison vcfcommonsamples.xml @ 0:6a1a90ea160f
Imported from capsule None
| author | anton |
|---|---|
| date | Wed, 11 Jun 2014 17:12:01 -0400 |
| parents | |
| children | 239ddfe40290 |
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| -1:000000000000 | 0:6a1a90ea160f |
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| 1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.1"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement> | |
| 4 </requirements> | |
| 5 <description>Output records belonging to samples commong between two datasets</description> | |
| 6 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command> | |
| 7 <inputs> | |
| 8 <param format="vcf" name="input1" type="data" label="First dataset"/> | |
| 9 <param format="vcf" name="input2" type="data" label="Second dataset"/> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data format="vcf" name="out_file1" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input1" value="vcflib.vcf"/> | |
| 17 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/> | |
| 18 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help> | |
| 22 | |
| 23 Outputs each record in the first file, removing samples not present in the second. | |
| 24 | |
| 25 ---- | |
| 26 | |
| 27 Vcfcommonsamples is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). | |
| 28 | |
| 29 </help> | |
| 30 </tool> |