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1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.1">
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2 <requirements>
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3 <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement>
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4 </requirements>
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5 <description>Output records belonging to samples commong between two datasets</description>
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6 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
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7 <inputs>
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8 <param format="vcf" name="input1" type="data" label="First dataset"/>
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9 <param format="vcf" name="input2" type="data" label="Second dataset"/>
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10 </inputs>
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11 <outputs>
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12 <data format="vcf" name="out_file1" />
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13 </outputs>
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14 <tests>
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15 <test>
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16 <param name="input1" value="vcflib.vcf"/>
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17 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
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18 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
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19 </test>
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20 </tests>
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21 <help>
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22
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23 Outputs each record in the first file, removing samples not present in the second.
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24
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25 ----
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26
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27 Vcfcommonsamples is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).
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28
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29 </help>
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30 </tool>
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